miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29129 3' -59 NC_006146.1 + 5203 0.67 0.714681
Target:  5'- cUGggccuGGGGGaGCUAGGGGUgcagGUCCUUg -3'
miRNA:   3'- cACau---CCUCC-CGGUCCUCGa---CAGGAG- -5'
29129 3' -59 NC_006146.1 + 23131 0.72 0.458925
Target:  5'- --cUGGGAGaGGCCGGGAGcCUGggCUUCg -3'
miRNA:   3'- cacAUCCUC-CCGGUCCUC-GACa-GGAG- -5'
29129 3' -59 NC_006146.1 + 27899 0.68 0.644719
Target:  5'- ----cGGAGGGgaCCGGGAGCUGcUCC-Ca -3'
miRNA:   3'- cacauCCUCCC--GGUCCUCGAC-AGGaG- -5'
29129 3' -59 NC_006146.1 + 37672 0.68 0.674925
Target:  5'- -gGUAGGGGGGCUGGGGGCa------ -3'
miRNA:   3'- caCAUCCUCCCGGUCCUCGacaggag -5'
29129 3' -59 NC_006146.1 + 41035 0.67 0.694905
Target:  5'- cGUGggAGGAGGGCCuAGGAcaGCU-UCCg- -3'
miRNA:   3'- -CACa-UCCUCCCGG-UCCU--CGAcAGGag -5'
29129 3' -59 NC_006146.1 + 41304 0.7 0.544507
Target:  5'- gGUGaGGGgcaGGGGCUuuuucagaGGGAGCUGUCCcuUCa -3'
miRNA:   3'- -CACaUCC---UCCCGG--------UCCUCGACAGG--AG- -5'
29129 3' -59 NC_006146.1 + 41597 0.68 0.644719
Target:  5'- -aGgcGGAGaGGCCcgGGGGGCUgGUCCg- -3'
miRNA:   3'- caCauCCUC-CCGG--UCCUCGA-CAGGag -5'
29129 3' -59 NC_006146.1 + 42882 0.66 0.762765
Target:  5'- -gGUGGGAGGcGaagGGGGGCacGUCCUCc -3'
miRNA:   3'- caCAUCCUCC-Cgg-UCCUCGa-CAGGAG- -5'
29129 3' -59 NC_006146.1 + 49675 0.67 0.714681
Target:  5'- ---cAGGGGGGCUAuGGcGGCgucGUCCUCc -3'
miRNA:   3'- cacaUCCUCCCGGU-CC-UCGa--CAGGAG- -5'
29129 3' -59 NC_006146.1 + 49716 0.69 0.594282
Target:  5'- uUGcAGucGGGCCAGGAGCUGguugauUUCUCg -3'
miRNA:   3'- cACaUCcuCCCGGUCCUCGAC------AGGAG- -5'
29129 3' -59 NC_006146.1 + 49787 0.74 0.341757
Target:  5'- uGUGUcucAGGAGGGgCAGGAagaugggugGCUGUCgUCg -3'
miRNA:   3'- -CACA---UCCUCCCgGUCCU---------CGACAGgAG- -5'
29129 3' -59 NC_006146.1 + 50057 0.71 0.505685
Target:  5'- --uUAGcAGGGCCAGGaAGCggacGUCCUCu -3'
miRNA:   3'- cacAUCcUCCCGGUCC-UCGa---CAGGAG- -5'
29129 3' -59 NC_006146.1 + 51676 0.7 0.553382
Target:  5'- cUGaAGGGGGGCgacggggCGGGGGCUgaucGUCCUCc -3'
miRNA:   3'- cACaUCCUCCCG-------GUCCUCGA----CAGGAG- -5'
29129 3' -59 NC_006146.1 + 51750 0.66 0.799255
Target:  5'- ---gAGGuGGGCUucuuguGcGGGCUGUCCUUa -3'
miRNA:   3'- cacaUCCuCCCGGu-----C-CUCGACAGGAG- -5'
29129 3' -59 NC_006146.1 + 52332 0.66 0.799255
Target:  5'- -cGUGGGccgGGGuGCCcGGGGCggcGUCCUUu -3'
miRNA:   3'- caCAUCC---UCC-CGGuCCUCGa--CAGGAG- -5'
29129 3' -59 NC_006146.1 + 67003 0.67 0.714681
Target:  5'- gGUGUAGGAGauGGCCcgGGuGAGCcgcgUGUCCg- -3'
miRNA:   3'- -CACAUCCUC--CCGG--UC-CUCG----ACAGGag -5'
29129 3' -59 NC_006146.1 + 74430 0.7 0.544507
Target:  5'- ---cAGGuGGGCCAGGA--UGUCCUUg -3'
miRNA:   3'- cacaUCCuCCCGGUCCUcgACAGGAG- -5'
29129 3' -59 NC_006146.1 + 76395 0.66 0.762765
Target:  5'- ---gGGGAGGGaCCGGGGGCg--CCg- -3'
miRNA:   3'- cacaUCCUCCC-GGUCCUCGacaGGag -5'
29129 3' -59 NC_006146.1 + 88489 0.68 0.663873
Target:  5'- aUGUAuGGAgccaaugGGGCCuGGGGCUGUaUCUCc -3'
miRNA:   3'- cACAU-CCU-------CCCGGuCCUCGACA-GGAG- -5'
29129 3' -59 NC_006146.1 + 88852 0.69 0.594282
Target:  5'- -gGUAGGgaaucggcGGGGCCuGGGGCUGUUgUg -3'
miRNA:   3'- caCAUCC--------UCCCGGuCCUCGACAGgAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.