Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29129 | 3' | -59 | NC_006146.1 | + | 151307 | 1.1 | 0.001273 |
Target: 5'- cGUGUAGGAGGGCCAGGAGCUGUCCUCg -3' miRNA: 3'- -CACAUCCUCCCGGUCCUCGACAGGAG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 169183 | 0.67 | 0.704823 |
Target: 5'- ---aGGGGGGGCCGgcGGGGC-GUCCcgUCg -3' miRNA: 3'- cacaUCCUCCCGGU--CCUCGaCAGG--AG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 41035 | 0.67 | 0.694905 |
Target: 5'- cGUGggAGGAGGGCCuAGGAcaGCU-UCCg- -3' miRNA: 3'- -CACa-UCCUCCCGG-UCCU--CGAcAGGag -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 153533 | 0.68 | 0.674925 |
Target: 5'- -aGUGGG-GGGCguGGGGCUG-CUUg -3' miRNA: 3'- caCAUCCuCCCGguCCUCGACaGGAg -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 107625 | 0.68 | 0.654808 |
Target: 5'- ----cGGAGGuGCCAGG-GCUGUCaUCu -3' miRNA: 3'- cacauCCUCC-CGGUCCuCGACAGgAG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 41597 | 0.68 | 0.644719 |
Target: 5'- -aGgcGGAGaGGCCcgGGGGGCUgGUCCg- -3' miRNA: 3'- caCauCCUC-CCGG--UCCUCGA-CAGGag -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 52332 | 0.66 | 0.799255 |
Target: 5'- -cGUGGGccgGGGuGCCcGGGGCggcGUCCUUu -3' miRNA: 3'- caCAUCC---UCC-CGGuCCUCGa--CAGGAG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 167654 | 0.67 | 0.714681 |
Target: 5'- cGUGccGGGGGcCCGGGGGCgUGUCC-Cg -3' miRNA: 3'- -CACauCCUCCcGGUCCUCG-ACAGGaG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 5203 | 0.67 | 0.714681 |
Target: 5'- cUGggccuGGGGGaGCUAGGGGUgcagGUCCUUg -3' miRNA: 3'- cACau---CCUCC-CGGUCCUCGa---CAGGAG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 168251 | 0.67 | 0.704823 |
Target: 5'- ---aGGGGGGGCCGgcGGGGC-GUCCcgUCg -3' miRNA: 3'- cacaUCCUCCCGGU--CCUCGaCAGG--AG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 143579 | 0.68 | 0.674925 |
Target: 5'- cUGUuuuuGGAGGGCCAGuugaagcaGGCaUGUCUUCa -3' miRNA: 3'- cACAu---CCUCCCGGUCc-------UCG-ACAGGAG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 50057 | 0.71 | 0.505685 |
Target: 5'- --uUAGcAGGGCCAGGaAGCggacGUCCUCu -3' miRNA: 3'- cacAUCcUCCCGGUCC-UCGa---CAGGAG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 49675 | 0.67 | 0.714681 |
Target: 5'- ---cAGGGGGGCUAuGGcGGCgucGUCCUCc -3' miRNA: 3'- cacaUCCUCCCGGU-CC-UCGa--CAGGAG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 119964 | 0.7 | 0.544507 |
Target: 5'- -gGUGGG-GGGUCAGGAGacg-CCUCg -3' miRNA: 3'- caCAUCCuCCCGGUCCUCgacaGGAG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 167319 | 0.67 | 0.704823 |
Target: 5'- ---aGGGGGGGCCGgcGGGGC-GUCCcgUCg -3' miRNA: 3'- cacaUCCUCCCGGU--CCUCGaCAGG--AG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 67003 | 0.67 | 0.714681 |
Target: 5'- gGUGUAGGAGauGGCCcgGGuGAGCcgcgUGUCCg- -3' miRNA: 3'- -CACAUCCUC--CCGG--UC-CUCG----ACAGGag -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 51750 | 0.66 | 0.799255 |
Target: 5'- ---gAGGuGGGCUucuuguGcGGGCUGUCCUUa -3' miRNA: 3'- cacaUCCuCCCGGu-----C-CUCGACAGGAG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 51676 | 0.7 | 0.553382 |
Target: 5'- cUGaAGGGGGGCgacggggCGGGGGCUgaucGUCCUCc -3' miRNA: 3'- cACaUCCUCCCG-------GUCCUCGA----CAGGAG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 170114 | 0.67 | 0.704823 |
Target: 5'- ---aGGGGGGGCCGgcGGGGC-GUCCcgUCg -3' miRNA: 3'- cacaUCCUCCCGGU--CCUCGaCAGG--AG- -5' |
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29129 | 3' | -59 | NC_006146.1 | + | 27899 | 0.68 | 0.644719 |
Target: 5'- ----cGGAGGGgaCCGGGAGCUGcUCC-Ca -3' miRNA: 3'- cacauCCUCCC--GGUCCUCGAC-AGGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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