miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 114133 0.71 0.69826
Target:  5'- cGAGGA-GGCcugcgcguGCUCCGCGaUCAGGCc -3'
miRNA:   3'- -CUCCUgCCGuu------UGAGGUGCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 54038 0.71 0.69826
Target:  5'- gGAGGGCGGCcAugUCgGCGguggUCAGGg -3'
miRNA:   3'- -CUCCUGCCGuUugAGgUGCa---GGUCCg -5'
29131 3' -55.7 NC_006146.1 + 127156 0.71 0.71812
Target:  5'- -uGGACGGCGucauGCgcgaccaCCugGcCCGGGCg -3'
miRNA:   3'- cuCCUGCCGUu---UGa------GGugCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 123029 0.71 0.727945
Target:  5'- cGAGGccgaGGC-GGC-CCAgGUCCGGGCg -3'
miRNA:   3'- -CUCCug--CCGuUUGaGGUgCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 48027 0.71 0.727945
Target:  5'- gGAGGcACGGCGGGCcggcucgggucgUCCAgCGccCCGGGCa -3'
miRNA:   3'- -CUCC-UGCCGUUUG------------AGGU-GCa-GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 47712 0.7 0.737689
Target:  5'- aGAGGugGGgAgcagcgcccggAGCUCguCGUCCGGGg -3'
miRNA:   3'- -CUCCugCCgU-----------UUGAGguGCAGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 130128 0.7 0.746381
Target:  5'- cAGGAUgauggaguucuugGGCAGG-UCCACGUCCGuGGCc -3'
miRNA:   3'- cUCCUG-------------CCGUUUgAGGUGCAGGU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 94776 0.7 0.747342
Target:  5'- aGAGGGCccaguuGCGGGCcacgUCCACGUaggCCAGGCc -3'
miRNA:   3'- -CUCCUGc-----CGUUUG----AGGUGCA---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 137996 0.7 0.751176
Target:  5'- cGGGGugGGgggugcgcccccagcCGGAC-CCugGUgCCAGGCa -3'
miRNA:   3'- -CUCCugCC---------------GUUUGaGGugCA-GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 49533 0.7 0.76634
Target:  5'- cGGGGGCuccucugggGGCGGAggCCACGccggCCAGGCc -3'
miRNA:   3'- -CUCCUG---------CCGUUUgaGGUGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 9461 0.7 0.775667
Target:  5'- -cGGugGGCGcgGGgUCCGCGcCCucuGGCa -3'
miRNA:   3'- cuCCugCCGU--UUgAGGUGCaGGu--CCG- -5'
29131 3' -55.7 NC_006146.1 + 9876 0.7 0.782121
Target:  5'- cAGGACGGCccGCUCaCccacaaaggcggugACGgCCAGGCa -3'
miRNA:   3'- cUCCUGCCGuuUGAG-G--------------UGCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 122490 0.7 0.783954
Target:  5'- cGGGGACGGCGgcggggucgagagAAUggaggCCGCGgagcCCGGGUg -3'
miRNA:   3'- -CUCCUGCCGU-------------UUGa----GGUGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 128188 0.7 0.784868
Target:  5'- gGAGG-CGGCccagggGGGCgCCGCGgcgCCGGGCc -3'
miRNA:   3'- -CUCCuGCCG------UUUGaGGUGCa--GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 146025 0.7 0.784868
Target:  5'- cAGGGgGGCAGcuccuggcACUgCGCGUCCAGcuGCa -3'
miRNA:   3'- cUCCUgCCGUU--------UGAgGUGCAGGUC--CG- -5'
29131 3' -55.7 NC_006146.1 + 114690 0.7 0.784868
Target:  5'- -uGGACGGCucGCggcucgUCCGCGagacCCGGGCc -3'
miRNA:   3'- cuCCUGCCGuuUG------AGGUGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 161492 0.69 0.793932
Target:  5'- gGGGGAUGGCAGcCUCUcUGUUguGGUg -3'
miRNA:   3'- -CUCCUGCCGUUuGAGGuGCAGguCCG- -5'
29131 3' -55.7 NC_006146.1 + 69582 0.69 0.793932
Target:  5'- gGGGGAagaUGGCcAGgUCCuggggcagcgagACGUCCAGGCc -3'
miRNA:   3'- -CUCCU---GCCGuUUgAGG------------UGCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 65053 0.69 0.793932
Target:  5'- cGAGGAgCGGCAcugcgucuACUCgGCGgcgCgGGGCa -3'
miRNA:   3'- -CUCCU-GCCGUu-------UGAGgUGCa--GgUCCG- -5'
29131 3' -55.7 NC_006146.1 + 115059 0.69 0.793932
Target:  5'- aGGGGAagggGGCGAACauUCCGCccacCCAGGCc -3'
miRNA:   3'- -CUCCUg---CCGUUUG--AGGUGca--GGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.