miRNA display CGI


Results 61 - 80 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 106129 0.67 0.908445
Target:  5'- cGAGGGuugaggGGUgaGAGCUCCAaggCCAGGCu -3'
miRNA:   3'- -CUCCUg-----CCG--UUUGAGGUgcaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 105339 0.71 0.678182
Target:  5'- gGAGGGugaGGUAGACUCCACGgaCGGGg -3'
miRNA:   3'- -CUCCUg--CCGUUUGAGGUGCagGUCCg -5'
29131 3' -55.7 NC_006146.1 + 104347 0.68 0.852899
Target:  5'- -cGGcccuUGGCGGACUuuagccUCACGUCCAGGa -3'
miRNA:   3'- cuCCu---GCCGUUUGA------GGUGCAGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 103564 0.67 0.889265
Target:  5'- cGAGGAUgGGCucGCccgggCCugGgCCGGGCu -3'
miRNA:   3'- -CUCCUG-CCGuuUGa----GGugCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 103150 0.69 0.802853
Target:  5'- gGGGGA-GGUcuuuGGCUCCucCGUCUGGGCg -3'
miRNA:   3'- -CUCCUgCCGu---UUGAGGu-GCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 102960 0.73 0.575848
Target:  5'- cGAGGGCagccgcccauccgGGaCAuACUCCACGgugggCCGGGCu -3'
miRNA:   3'- -CUCCUG-------------CC-GUuUGAGGUGCa----GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 101955 0.68 0.836931
Target:  5'- uGAGacaACGGCGGAgauCUCCugGgcCCAGGCc -3'
miRNA:   3'- -CUCc--UGCCGUUU---GAGGugCa-GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 101692 0.68 0.84501
Target:  5'- aGAGGACGGUcuccgcccAAGC-CCACGUCCc--- -3'
miRNA:   3'- -CUCCUGCCG--------UUUGaGGUGCAGGuccg -5'
29131 3' -55.7 NC_006146.1 + 100103 0.68 0.875356
Target:  5'- -cGGACGGUGGACaggagUCUGCGgucCCGGGUu -3'
miRNA:   3'- cuCCUGCCGUUUG-----AGGUGCa--GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 98301 0.66 0.913794
Target:  5'- uGGGGCugagGGCGuGCUCCguggccgucuggcACGgggCCGGGCg -3'
miRNA:   3'- cUCCUG----CCGUuUGAGG-------------UGCa--GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 98241 0.67 0.907839
Target:  5'- cGGGGugcAgGGCGGACagCACGUCCaacagaaAGGCc -3'
miRNA:   3'- -CUCC---UgCCGUUUGagGUGCAGG-------UCCG- -5'
29131 3' -55.7 NC_006146.1 + 94912 0.68 0.867338
Target:  5'- uGGGugGGCGAGC-CCACGcagacgaUgCAGGg -3'
miRNA:   3'- cUCCugCCGUUUGaGGUGC-------AgGUCCg -5'
29131 3' -55.7 NC_006146.1 + 94868 0.66 0.94051
Target:  5'- aGGGGGCGG-AGAUUCCACa-CgAGGUa -3'
miRNA:   3'- -CUCCUGCCgUUUGAGGUGcaGgUCCG- -5'
29131 3' -55.7 NC_006146.1 + 94776 0.7 0.747342
Target:  5'- aGAGGGCccaguuGCGGGCcacgUCCACGUaggCCAGGCc -3'
miRNA:   3'- -CUCCUGc-----CGUUUG----AGGUGCA---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 93933 0.72 0.627479
Target:  5'- aGGcGGCGGCgGGGCUCCGCucuccGUCcCAGGCg -3'
miRNA:   3'- cUC-CUGCCG-UUUGAGGUG-----CAG-GUCCG- -5'
29131 3' -55.7 NC_006146.1 + 93818 0.74 0.556827
Target:  5'- -cGGACGGC------CACGUCCAGGCa -3'
miRNA:   3'- cuCCUGCCGuuugagGUGCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 92928 0.66 0.935754
Target:  5'- aGAGGAcCGGCAc-CUCCAaggCCAccGGCu -3'
miRNA:   3'- -CUCCU-GCCGUuuGAGGUgcaGGU--CCG- -5'
29131 3' -55.7 NC_006146.1 + 89697 0.66 0.94051
Target:  5'- cGGGGaACGGCcugGGAUaCaCGgGUCCGGGCc -3'
miRNA:   3'- -CUCC-UGCCG---UUUGaG-GUgCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 84960 0.73 0.606152
Target:  5'- uGGGGGgGGCAAAgUCC-CGcaggccaUCCAGGCc -3'
miRNA:   3'- -CUCCUgCCGUUUgAGGuGC-------AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 84433 0.67 0.89194
Target:  5'- uGAGGAUGGagaaggaaggccuccUAAGCUCCAaGUUCAaGGCc -3'
miRNA:   3'- -CUCCUGCC---------------GUUUGAGGUgCAGGU-CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.