miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 22635 0.66 0.930252
Target:  5'- aGAGGACGGagGAGCaccucagggugccUCCcCGggucCCAGGCc -3'
miRNA:   3'- -CUCCUGCCg-UUUG-------------AGGuGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 13401 0.66 0.930252
Target:  5'- aGAGGACGGagGAGCaccucagggugccUCCcCGggucCCAGGCc -3'
miRNA:   3'- -CUCCUGCCg-UUUG-------------AGGuGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 16479 0.66 0.930252
Target:  5'- aGAGGACGGagGAGCaccucagggugccUCCcCGggucCCAGGCc -3'
miRNA:   3'- -CUCCUGCCg-UUUG-------------AGGuGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 28791 0.66 0.930252
Target:  5'- aGAGGACGGagGAGCaccucagggugccUCCcCGggucCCAGGCc -3'
miRNA:   3'- -CUCCUGCCg-UUUG-------------AGGuGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 19557 0.66 0.930252
Target:  5'- aGAGGACGGagGAGCaccucagggugccUCCcCGggucCCAGGCc -3'
miRNA:   3'- -CUCCUGCCg-UUUG-------------AGGuGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 25713 0.66 0.930252
Target:  5'- aGAGGACGGagGAGCaccucagggugccUCCcCGggucCCAGGCc -3'
miRNA:   3'- -CUCCUGCCg-UUUG-------------AGGuGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 66340 0.66 0.925537
Target:  5'- uGGGAgcUGGCcAGC-CCACGUgCAGGg -3'
miRNA:   3'- cUCCU--GCCGuUUGaGGUGCAgGUCCg -5'
29131 3' -55.7 NC_006146.1 + 41400 0.66 0.925537
Target:  5'- uGAGGugGGCcuGAugUCCGCcugggGGGCa -3'
miRNA:   3'- -CUCCugCCG--UUugAGGUGcagg-UCCG- -5'
29131 3' -55.7 NC_006146.1 + 65453 0.66 0.925537
Target:  5'- gGAGGugGGCAcga-CCACGcuggCGGGCu -3'
miRNA:   3'- -CUCCugCCGUuugaGGUGCag--GUCCG- -5'
29131 3' -55.7 NC_006146.1 + 42340 0.66 0.925537
Target:  5'- cGAGG-CcGCGAACUgCCGC-UCCAGGa -3'
miRNA:   3'- -CUCCuGcCGUUUGA-GGUGcAGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 128741 0.66 0.925537
Target:  5'- gGAGGGgGGUGAG-UCCGUG-CCAGGCc -3'
miRNA:   3'- -CUCCUgCCGUUUgAGGUGCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 153656 0.66 0.925537
Target:  5'- aGAGGGCaccuacucgaGGCAGGCUuacaugggagUCAUGguaagCCAGGCc -3'
miRNA:   3'- -CUCCUG----------CCGUUUGA----------GGUGCa----GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 122772 0.66 0.92338
Target:  5'- cGGGGGCuGGcCGAACUCCAagagaagagaCGGGCg -3'
miRNA:   3'- -CUCCUG-CC-GUUUGAGGUgcag------GUCCG- -5'
29131 3' -55.7 NC_006146.1 + 126944 0.66 0.920075
Target:  5'- cAGGAUGGCGcuCUCCgggcGCGUCUGGa- -3'
miRNA:   3'- cUCCUGCCGUuuGAGG----UGCAGGUCcg -5'
29131 3' -55.7 NC_006146.1 + 68345 0.66 0.920075
Target:  5'- cGAGGACGGC---CUCCGCcguGUCaguguugguGGCa -3'
miRNA:   3'- -CUCCUGCCGuuuGAGGUG---CAGgu-------CCG- -5'
29131 3' -55.7 NC_006146.1 + 156665 0.66 0.920075
Target:  5'- gGAGGAgggcguccaacuCGGCAGaaggcccgcguuGCgcgCCAccgccucccCGUCCAGGCu -3'
miRNA:   3'- -CUCCU------------GCCGUU------------UGa--GGU---------GCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 12814 0.66 0.920075
Target:  5'- -cGGACGGCGGcuGCcggugCgCAUGUCCAaGGUg -3'
miRNA:   3'- cuCCUGCCGUU--UGa----G-GUGCAGGU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 109400 0.66 0.920075
Target:  5'- cAGGGCGGCAGGggcCUCCuCGgagcCCuGGUg -3'
miRNA:   3'- cUCCUGCCGUUU---GAGGuGCa---GGuCCG- -5'
29131 3' -55.7 NC_006146.1 + 168108 0.66 0.914377
Target:  5'- cGGGACGGgAGGCcggCgCGCGcCCGGGg -3'
miRNA:   3'- cUCCUGCCgUUUGa--G-GUGCaGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 169972 0.66 0.914377
Target:  5'- cGGGACGGgAGGCcggCgCGCGcCCGGGg -3'
miRNA:   3'- cUCCUGCCgUUUGa--G-GUGCaGGUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.