miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29133 3' -59.3 NC_006146.1 + 168528 0.66 0.802312
Target:  5'- --gGCCGGGCCuccccugggggccucGGGggcggagGGGGGGGUCc -3'
miRNA:   3'- cuaCGGCCCGG---------------UCUag-----UCCCUCCAGu -5'
29133 3' -59.3 NC_006146.1 + 167596 0.66 0.802312
Target:  5'- --gGCCGGGCCuccccugggggccucGGGggcggagGGGGGGGUCc -3'
miRNA:   3'- cuaCGGCCCGG---------------UCUag-----UCCCUCCAGu -5'
29133 3' -59.3 NC_006146.1 + 169460 0.66 0.802312
Target:  5'- --gGCCGGGCCuccccugggggccucGGGggcggagGGGGGGGUCc -3'
miRNA:   3'- cuaCGGCCCGG---------------UCUag-----UCCCUCCAGu -5'
29133 3' -59.3 NC_006146.1 + 170391 0.66 0.802312
Target:  5'- --gGCCGGGCCuccccugggggccucGGGggcggagGGGGGGGUCc -3'
miRNA:   3'- cuaCGGCCCGG---------------UCUag-----UCCCUCCAGu -5'
29133 3' -59.3 NC_006146.1 + 55013 0.66 0.798807
Target:  5'- ---cCCGGGCgGGAUgGGGGcgggcgggauggGGGUCGg -3'
miRNA:   3'- cuacGGCCCGgUCUAgUCCC------------UCCAGU- -5'
29133 3' -59.3 NC_006146.1 + 137019 0.66 0.798807
Target:  5'- --gGCCGGGCaCAcccCGGGGAGGa-- -3'
miRNA:   3'- cuaCGGCCCG-GUcuaGUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 137206 0.66 0.798807
Target:  5'- --gGCCGGGCaCAcccCGGGGAGGa-- -3'
miRNA:   3'- cuaCGGCCCG-GUcuaGUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 141723 0.66 0.798807
Target:  5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3'
miRNA:   3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 144801 0.66 0.798807
Target:  5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3'
miRNA:   3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 147879 0.66 0.798807
Target:  5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3'
miRNA:   3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 150957 0.66 0.798807
Target:  5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3'
miRNA:   3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 154035 0.66 0.798807
Target:  5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3'
miRNA:   3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 157113 0.66 0.798807
Target:  5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3'
miRNA:   3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5'
29133 3' -59.3 NC_006146.1 + 168235 0.66 0.780949
Target:  5'- aGggGCCGGcGCCug--CAGGGGGGg-- -3'
miRNA:   3'- -CuaCGGCC-CGGucuaGUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 167303 0.66 0.780949
Target:  5'- aGggGCCGGcGCCug--CAGGGGGGg-- -3'
miRNA:   3'- -CuaCGGCC-CGGucuaGUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 141576 0.66 0.780949
Target:  5'- --aGCCGGgGCC---UCGGGGAGGg-- -3'
miRNA:   3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 144654 0.66 0.780949
Target:  5'- --aGCCGGgGCC---UCGGGGAGGg-- -3'
miRNA:   3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 147731 0.66 0.780949
Target:  5'- --aGCCGGgGCC---UCGGGGAGGg-- -3'
miRNA:   3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 150809 0.66 0.780949
Target:  5'- --aGCCGGgGCC---UCGGGGAGGg-- -3'
miRNA:   3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5'
29133 3' -59.3 NC_006146.1 + 156965 0.66 0.780949
Target:  5'- --aGCCGGgGCC---UCGGGGAGGg-- -3'
miRNA:   3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.