Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29134 | 3' | -48.7 | NC_006146.1 | + | 75794 | 0.66 | 0.999467 |
Target: 5'- cUACUcGGGcgUCUCGggcgccgccuucGAGGCCcUGCg -3' miRNA: 3'- cAUGAaCCUuaAGAGU------------UUCCGGcGCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 117979 | 0.66 | 0.999467 |
Target: 5'- ----aUGaAAUUCUCAAAGG-UGCGCa -3' miRNA: 3'- caugaACcUUAAGAGUUUCCgGCGCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 170061 | 0.66 | 0.998997 |
Target: 5'- -----gGGAGggC-CcGGGGCCGCGCg -3' miRNA: 3'- caugaaCCUUaaGaGuUUCCGGCGCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 152220 | 0.66 | 0.998728 |
Target: 5'- gGUAUcUGGAucgugauagcgUCgccugCGAAGGCCGgGCa -3' miRNA: 3'- -CAUGaACCUua---------AGa----GUUUCCGGCgCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 150517 | 0.66 | 0.998997 |
Target: 5'- -gGCaUGGGuaggauaaaGUUCUCcuucuGGGCCGCGg -3' miRNA: 3'- caUGaACCU---------UAAGAGuu---UCCGGCGCg -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 167265 | 0.66 | 0.998997 |
Target: 5'- -----gGGAGggC-CcGGGGCCGCGCg -3' miRNA: 3'- caugaaCCUUaaGaGuUUCCGGCGCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 169129 | 0.66 | 0.998997 |
Target: 5'- -----gGGAGggC-CcGGGGCCGCGCg -3' miRNA: 3'- caugaaCCUUaaGaGuUUCCGGCGCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 90058 | 0.66 | 0.998776 |
Target: 5'- gGUGCUggaGGGAgcCUaGGAGGCgGUGCa -3' miRNA: 3'- -CAUGAa--CCUUaaGAgUUUCCGgCGCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 98313 | 0.66 | 0.998776 |
Target: 5'- cGUGCUccgUGGccgUCUgGcacGGGGCCGgGCg -3' miRNA: 3'- -CAUGA---ACCuuaAGAgU---UUCCGGCgCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 93462 | 0.66 | 0.999309 |
Target: 5'- -aGCUUGGAGcugaugccauagUCUCGGAuGCCGCa- -3' miRNA: 3'- caUGAACCUUa-----------AGAGUUUcCGGCGcg -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 51971 | 0.66 | 0.998776 |
Target: 5'- -gACggGGAggUCUCcggcaugcGGGCCGgGCg -3' miRNA: 3'- caUGaaCCUuaAGAGuu------UCCGGCgCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 142910 | 0.66 | 0.998776 |
Target: 5'- -gGCUguGAGgcCUCGAGGGCCGgGUu -3' miRNA: 3'- caUGAacCUUaaGAGUUUCCGGCgCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 123055 | 0.66 | 0.999338 |
Target: 5'- -cGCUggaGGAgaggGUcCUCGAGaGCCGCGCu -3' miRNA: 3'- caUGAa--CCU----UAaGAGUUUcCGGCGCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 74223 | 0.66 | 0.999183 |
Target: 5'- cGUGC-UGGAGaccUUCUUcuucAGGCCcuGCGCg -3' miRNA: 3'- -CAUGaACCUU---AAGAGuu--UCCGG--CGCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 14325 | 0.66 | 0.998997 |
Target: 5'- cUGCU-GGAGaaCUCAcgcAGGGCCGuUGCg -3' miRNA: 3'- cAUGAaCCUUaaGAGU---UUCCGGC-GCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 158301 | 0.66 | 0.998776 |
Target: 5'- -gGCUguGAGgcCUCGAGGGCCGgGUu -3' miRNA: 3'- caUGAacCUUaaGAGUUUCCGGCgCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 155222 | 0.66 | 0.998776 |
Target: 5'- -gGCUguGAGgcCUCGAGGGCCGgGUu -3' miRNA: 3'- caUGAacCUUaaGAGUUUCCGGCgCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 152144 | 0.66 | 0.998776 |
Target: 5'- -gGCUguGAGgcCUCGAGGGCCGgGUu -3' miRNA: 3'- caUGAacCUUaaGAGUUUCCGGCgCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 149066 | 0.66 | 0.998776 |
Target: 5'- -gGCUguGAGgcCUCGAGGGCCGgGUu -3' miRNA: 3'- caUGAacCUUaaGAGUUUCCGGCgCG- -5' |
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29134 | 3' | -48.7 | NC_006146.1 | + | 145988 | 0.66 | 0.998776 |
Target: 5'- -gGCUguGAGgcCUCGAGGGCCGgGUu -3' miRNA: 3'- caUGAacCUUaaGAGUUUCCGGCgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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