miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29134 3' -48.7 NC_006146.1 + 155298 1.12 0.01049
Target:  5'- uGUACUUGGAAUUCUCAAAGGCCGCGCc -3'
miRNA:   3'- -CAUGAACCUUAAGAGUUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 21030 0.78 0.739515
Target:  5'- aGUGCcgGGGAUUCUCGGAGggcgagacGCUGCGCu -3'
miRNA:   3'- -CAUGaaCCUUAAGAGUUUC--------CGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 108675 0.73 0.922522
Target:  5'- ----aUGGAGUUCUgcgccCAGAGGCUGCGg -3'
miRNA:   3'- caugaACCUUAAGA-----GUUUCCGGCGCg -5'
29134 3' -48.7 NC_006146.1 + 44419 0.72 0.956632
Target:  5'- -aGCUUGGAGUaacacCGAAGGUgCGCGCg -3'
miRNA:   3'- caUGAACCUUAaga--GUUUCCG-GCGCG- -5'
29134 3' -48.7 NC_006146.1 + 64428 0.72 0.958202
Target:  5'- aUACUUGGggU-CUCGGcgccgagacagccuuGGGUgGCGCu -3'
miRNA:   3'- cAUGAACCuuAaGAGUU---------------UCCGgCGCG- -5'
29134 3' -48.7 NC_006146.1 + 67194 0.72 0.960483
Target:  5'- --cCUUGGGAUUC-CAcuGGCCGUGg -3'
miRNA:   3'- cauGAACCUUAAGaGUuuCCGGCGCg -5'
29134 3' -48.7 NC_006146.1 + 115467 0.71 0.964092
Target:  5'- gGUACUgcugucGGcgggUCUCAacGAGGCCGCGg -3'
miRNA:   3'- -CAUGAa-----CCuua-AGAGU--UUCCGGCGCg -5'
29134 3' -48.7 NC_006146.1 + 31613 0.71 0.976224
Target:  5'- -cACggGGGAUgggCUC-AAGGCCGgGCc -3'
miRNA:   3'- caUGaaCCUUAa--GAGuUUCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 159851 0.7 0.978718
Target:  5'- -gGCgggUGGGugGUuagaaaugcUUUCAGAGGUCGCGCg -3'
miRNA:   3'- caUGa--ACCU--UA---------AGAGUUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 62907 0.7 0.983118
Target:  5'- uGUACUuUGGGguGUUUUCAgaugcggaggguGAGGCUGUGCc -3'
miRNA:   3'- -CAUGA-ACCU--UAAGAGU------------UUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 168148 0.7 0.983118
Target:  5'- -gGCUUGGGccug-CGAGGGCCGgGUa -3'
miRNA:   3'- caUGAACCUuaagaGUUUCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 108872 0.69 0.988383
Target:  5'- -gGC-UGGAAUgcggCAGAGGCCgaGCGCc -3'
miRNA:   3'- caUGaACCUUAaga-GUUUCCGG--CGCG- -5'
29134 3' -48.7 NC_006146.1 + 157341 0.69 0.98982
Target:  5'- -cGCgaGGGAgagUCUCu--GGCCGgGCg -3'
miRNA:   3'- caUGaaCCUUa--AGAGuuuCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 141951 0.69 0.98982
Target:  5'- -cGCgaGGGAgagUCUCu--GGCCGgGCg -3'
miRNA:   3'- caUGaaCCUUa--AGAGuuuCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 145029 0.69 0.98982
Target:  5'- -cGCgaGGGAgagUCUCu--GGCCGgGCg -3'
miRNA:   3'- caUGaaCCUUa--AGAGuuuCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 148107 0.69 0.98982
Target:  5'- -cGCgaGGGAgagUCUCu--GGCCGgGCg -3'
miRNA:   3'- caUGaaCCUUa--AGAGuuuCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 151185 0.69 0.98982
Target:  5'- -cGCgaGGGAgagUCUCu--GGCCGgGCg -3'
miRNA:   3'- caUGaaCCUUa--AGAGuuuCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 154263 0.69 0.98982
Target:  5'- -cGCgaGGGAgagUCUCu--GGCCGgGCg -3'
miRNA:   3'- caUGaaCCUUa--AGAGuuuCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 35503 0.69 0.98982
Target:  5'- -aGCcUGGggUUC-----GGCCGCGCg -3'
miRNA:   3'- caUGaACCuuAAGaguuuCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 44086 0.69 0.98982
Target:  5'- -gACUgGGGugGUUC-CAccucGGGCCGCGCg -3'
miRNA:   3'- caUGAaCCU--UAAGaGUu---UCCGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.