miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29134 3' -48.7 NC_006146.1 + 155298 1.12 0.01049
Target:  5'- uGUACUUGGAAUUCUCAAAGGCCGCGCc -3'
miRNA:   3'- -CAUGAACCUUAAGAGUUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 51971 0.66 0.998776
Target:  5'- -gACggGGAggUCUCcggcaugcGGGCCGgGCg -3'
miRNA:   3'- caUGaaCCUuaAGAGuu------UCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 167265 0.66 0.998997
Target:  5'- -----gGGAGggC-CcGGGGCCGCGCg -3'
miRNA:   3'- caugaaCCUUaaGaGuUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 117979 0.66 0.999467
Target:  5'- ----aUGaAAUUCUCAAAGG-UGCGCa -3'
miRNA:   3'- caugaACcUUAAGAGUUUCCgGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 69973 0.68 0.994235
Target:  5'- -aGCUUGucAUUCUgGAAGGCguaGCGUa -3'
miRNA:   3'- caUGAACcuUAAGAgUUUCCGg--CGCG- -5'
29134 3' -48.7 NC_006146.1 + 55455 0.68 0.995052
Target:  5'- aGUACcgUGGccacccgCUCGAuGGCCGCGg -3'
miRNA:   3'- -CAUGa-ACCuuaa---GAGUUuCCGGCGCg -5'
29134 3' -48.7 NC_006146.1 + 155699 0.68 0.995052
Target:  5'- gGUACUgcGggUUCgaggUGAAggcGGCCGCGCa -3'
miRNA:   3'- -CAUGAacCuuAAGa---GUUU---CCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 109289 0.68 0.995772
Target:  5'- -aGCUgGGAGggaUCUCGGccccGGCCGCGg -3'
miRNA:   3'- caUGAaCCUUa--AGAGUUu---CCGGCGCg -5'
29134 3' -48.7 NC_006146.1 + 157984 0.67 0.996957
Target:  5'- -gGCggUGGAcuugaugaagcuGUUCUgGAGGGCgGCGUu -3'
miRNA:   3'- caUGa-ACCU------------UAAGAgUUUCCGgCGCG- -5'
29134 3' -48.7 NC_006146.1 + 98313 0.66 0.998776
Target:  5'- cGUGCUccgUGGccgUCUgGcacGGGGCCGgGCg -3'
miRNA:   3'- -CAUGA---ACCuuaAGAgU---UUCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 44221 0.67 0.99821
Target:  5'- gGUGcCUUGGugaccgUCUCcucuGGCCGgGCg -3'
miRNA:   3'- -CAU-GAACCuua---AGAGuuu-CCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 49455 0.67 0.996957
Target:  5'- uGUACUUcuccaugaccGGGAUgg-UGAGGGCCGCGg -3'
miRNA:   3'- -CAUGAA----------CCUUAagaGUUUCCGGCGCg -5'
29134 3' -48.7 NC_006146.1 + 67194 0.72 0.960483
Target:  5'- --cCUUGGGAUUC-CAcuGGCCGUGg -3'
miRNA:   3'- cauGAACCUUAAGaGUuuCCGGCGCg -5'
29134 3' -48.7 NC_006146.1 + 152220 0.66 0.998728
Target:  5'- gGUAUcUGGAucgugauagcgUCgccugCGAAGGCCGgGCa -3'
miRNA:   3'- -CAUGaACCUua---------AGa----GUUUCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 44086 0.69 0.98982
Target:  5'- -gACUgGGGugGUUC-CAccucGGGCCGCGCg -3'
miRNA:   3'- caUGAaCCU--UAAGaGUu---UCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 159366 0.67 0.996905
Target:  5'- -gGCggGGGcgUagcugaccgccagCUCGcAGGCCGCGCu -3'
miRNA:   3'- caUGaaCCUuaA-------------GAGUuUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 90058 0.66 0.998776
Target:  5'- gGUGCUggaGGGAgcCUaGGAGGCgGUGCa -3'
miRNA:   3'- -CAUGAa--CCUUaaGAgUUUCCGgCGCG- -5'
29134 3' -48.7 NC_006146.1 + 150517 0.66 0.998997
Target:  5'- -gGCaUGGGuaggauaaaGUUCUCcuucuGGGCCGCGg -3'
miRNA:   3'- caUGaACCU---------UAAGAGuu---UCCGGCGCg -5'
29134 3' -48.7 NC_006146.1 + 35503 0.69 0.98982
Target:  5'- -aGCcUGGggUUC-----GGCCGCGCg -3'
miRNA:   3'- caUGaACCuuAAGaguuuCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 98991 0.68 0.995052
Target:  5'- -----aGGcccaggUCAGAGGCCGCGCg -3'
miRNA:   3'- caugaaCCuuaag-AGUUUCCGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.