miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29134 3' -48.7 NC_006146.1 + 31613 0.71 0.976224
Target:  5'- -cACggGGGAUgggCUC-AAGGCCGgGCc -3'
miRNA:   3'- caUGaaCCUUAa--GAGuUUCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 151185 0.69 0.98982
Target:  5'- -cGCgaGGGAgagUCUCu--GGCCGgGCg -3'
miRNA:   3'- caUGaaCCUUa--AGAGuuuCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 148107 0.69 0.98982
Target:  5'- -cGCgaGGGAgagUCUCu--GGCCGgGCg -3'
miRNA:   3'- caUGaaCCUUa--AGAGuuuCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 145029 0.69 0.98982
Target:  5'- -cGCgaGGGAgagUCUCu--GGCCGgGCg -3'
miRNA:   3'- caUGaaCCUUa--AGAGuuuCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 141951 0.69 0.98982
Target:  5'- -cGCgaGGGAgagUCUCu--GGCCGgGCg -3'
miRNA:   3'- caUGaaCCUUa--AGAGuuuCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 108872 0.69 0.988383
Target:  5'- -gGC-UGGAAUgcggCAGAGGCCgaGCGCc -3'
miRNA:   3'- caUGaACCUUAaga-GUUUCCGG--CGCG- -5'
29134 3' -48.7 NC_006146.1 + 168148 0.7 0.983118
Target:  5'- -gGCUUGGGccug-CGAGGGCCGgGUa -3'
miRNA:   3'- caUGAACCUuaagaGUUUCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 62907 0.7 0.983118
Target:  5'- uGUACUuUGGGguGUUUUCAgaugcggaggguGAGGCUGUGCc -3'
miRNA:   3'- -CAUGA-ACCU--UAAGAGU------------UUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 159851 0.7 0.978718
Target:  5'- -gGCgggUGGGugGUuagaaaugcUUUCAGAGGUCGCGCg -3'
miRNA:   3'- caUGa--ACCU--UA---------AGAGUUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 154263 0.69 0.98982
Target:  5'- -cGCgaGGGAgagUCUCu--GGCCGgGCg -3'
miRNA:   3'- caUGaaCCUUa--AGAGuuuCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 157341 0.69 0.98982
Target:  5'- -cGCgaGGGAgagUCUCu--GGCCGgGCg -3'
miRNA:   3'- caUGaaCCUUa--AGAGuuuCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 142910 0.66 0.998776
Target:  5'- -gGCUguGAGgcCUCGAGGGCCGgGUu -3'
miRNA:   3'- caUGAacCUUaaGAGUUUCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 123055 0.66 0.999338
Target:  5'- -cGCUggaGGAgaggGUcCUCGAGaGCCGCGCu -3'
miRNA:   3'- caUGAa--CCU----UAaGAGUUUcCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 74223 0.66 0.999183
Target:  5'- cGUGC-UGGAGaccUUCUUcuucAGGCCcuGCGCg -3'
miRNA:   3'- -CAUGaACCUU---AAGAGuu--UCCGG--CGCG- -5'
29134 3' -48.7 NC_006146.1 + 14325 0.66 0.998997
Target:  5'- cUGCU-GGAGaaCUCAcgcAGGGCCGuUGCg -3'
miRNA:   3'- cAUGAaCCUUaaGAGU---UUCCGGC-GCG- -5'
29134 3' -48.7 NC_006146.1 + 158301 0.66 0.998776
Target:  5'- -gGCUguGAGgcCUCGAGGGCCGgGUu -3'
miRNA:   3'- caUGAacCUUaaGAGUUUCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 155222 0.66 0.998776
Target:  5'- -gGCUguGAGgcCUCGAGGGCCGgGUu -3'
miRNA:   3'- caUGAacCUUaaGAGUUUCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 152144 0.66 0.998776
Target:  5'- -gGCUguGAGgcCUCGAGGGCCGgGUu -3'
miRNA:   3'- caUGAacCUUaaGAGUUUCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 149066 0.66 0.998776
Target:  5'- -gGCUguGAGgcCUCGAGGGCCGgGUu -3'
miRNA:   3'- caUGAacCUUaaGAGUUUCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 145988 0.66 0.998776
Target:  5'- -gGCUguGAGgcCUCGAGGGCCGgGUu -3'
miRNA:   3'- caUGAacCUUaaGAGUUUCCGGCgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.