miRNA display CGI


Results 21 - 40 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29135 3' -55.3 NC_006146.1 + 169277 0.76 0.487669
Target:  5'- gCCUGGCGggGGCcagcgcggggucccGGGGCGGGGGGuCGGg -3'
miRNA:   3'- gGGACCGU--UUG--------------UCCCGUCUCUCuGCC- -5'
29135 3' -55.3 NC_006146.1 + 170208 0.76 0.487669
Target:  5'- gCCUGGCGggGGCcagcgcggggucccGGGGCGGGGGGuCGGg -3'
miRNA:   3'- gGGACCGU--UUG--------------UCCCGUCUCUCuGCC- -5'
29135 3' -55.3 NC_006146.1 + 168345 0.76 0.487669
Target:  5'- gCCUGGCGggGGCcagcgcggggucccGGGGCGGGGGGuCGGg -3'
miRNA:   3'- gGGACCGU--UUG--------------UCCCGUCUCUCuGCC- -5'
29135 3' -55.3 NC_006146.1 + 167413 0.76 0.487669
Target:  5'- gCCUGGCGggGGCcagcgcggggucccGGGGCGGGGGGuCGGg -3'
miRNA:   3'- gGGACCGU--UUG--------------UCCCGUCUCUCuGCC- -5'
29135 3' -55.3 NC_006146.1 + 116733 0.75 0.508611
Target:  5'- cCCCUGGCGaaagaggagGACgaggaggAGGGCAGGGGGGCc- -3'
miRNA:   3'- -GGGACCGU---------UUG-------UCCCGUCUCUCUGcc -5'
29135 3' -55.3 NC_006146.1 + 123712 0.75 0.509572
Target:  5'- gCCUGGCGcuCGGGGCGGc--GGCGGg -3'
miRNA:   3'- gGGACCGUuuGUCCCGUCucuCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 3755 0.75 0.526023
Target:  5'- gCCCUGGCAcaGugcccacuuucuacGCGGGGgGGGGGGGgGGg -3'
miRNA:   3'- -GGGACCGU--U--------------UGUCCCgUCUCUCUgCC- -5'
29135 3' -55.3 NC_006146.1 + 107976 0.75 0.528948
Target:  5'- gCCCUGGagaccaCAGACAGGGCAa--AGACGGu -3'
miRNA:   3'- -GGGACC------GUUUGUCCCGUcucUCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 165959 0.75 0.538737
Target:  5'- cCCCUGGUcccCGGGGCAcAGAGcACGGc -3'
miRNA:   3'- -GGGACCGuuuGUCCCGUcUCUC-UGCC- -5'
29135 3' -55.3 NC_006146.1 + 78108 0.74 0.558494
Target:  5'- gCCCUGGaAGACAGGGaagccuGAGAGGCa- -3'
miRNA:   3'- -GGGACCgUUUGUCCCgu----CUCUCUGcc -5'
29135 3' -55.3 NC_006146.1 + 114964 0.74 0.568449
Target:  5'- gCCCUGGa----GGaGGCAGAGAgGGCGGg -3'
miRNA:   3'- -GGGACCguuugUC-CCGUCUCU-CUGCC- -5'
29135 3' -55.3 NC_006146.1 + 151048 0.74 0.578449
Target:  5'- aCCCgagaGGCcgaAAGCGGGGgGGGGGGACuGGg -3'
miRNA:   3'- -GGGa---CCG---UUUGUCCCgUCUCUCUG-CC- -5'
29135 3' -55.3 NC_006146.1 + 144892 0.74 0.578449
Target:  5'- aCCCgagaGGCcgaAAGCGGGGgGGGGGGACuGGg -3'
miRNA:   3'- -GGGa---CCG---UUUGUCCCgUCUCUCUG-CC- -5'
29135 3' -55.3 NC_006146.1 + 147970 0.74 0.578449
Target:  5'- aCCCgagaGGCcgaAAGCGGGGgGGGGGGACuGGg -3'
miRNA:   3'- -GGGa---CCG---UUUGUCCCgUCUCUCUG-CC- -5'
29135 3' -55.3 NC_006146.1 + 157204 0.74 0.578449
Target:  5'- aCCCgagaGGCcgaAAGCGGGGgGGGGGGACuGGg -3'
miRNA:   3'- -GGGa---CCG---UUUGUCCCgUCUCUCUG-CC- -5'
29135 3' -55.3 NC_006146.1 + 154126 0.74 0.578449
Target:  5'- aCCCgagaGGCcgaAAGCGGGGgGGGGGGACuGGg -3'
miRNA:   3'- -GGGa---CCG---UUUGUCCCgUCUCUCUG-CC- -5'
29135 3' -55.3 NC_006146.1 + 82587 0.74 0.578449
Target:  5'- uUCCauaaGGCAAACAGGGaGGAGAGAagaGGc -3'
miRNA:   3'- -GGGa---CCGUUUGUCCCgUCUCUCUg--CC- -5'
29135 3' -55.3 NC_006146.1 + 141814 0.74 0.578449
Target:  5'- aCCCgagaGGCcgaAAGCGGGGgGGGGGGACuGGg -3'
miRNA:   3'- -GGGa---CCG---UUUGUCCCgUCUCUCUG-CC- -5'
29135 3' -55.3 NC_006146.1 + 115666 0.74 0.588486
Target:  5'- gCCCgGGCGAcguACcugAGGGCGGAggcaGAGGCGGc -3'
miRNA:   3'- -GGGaCCGUU---UG---UCCCGUCU----CUCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 34004 0.74 0.598554
Target:  5'- aCCUGGaAGGCAGGGgGGGGgucggggcAGGCGGg -3'
miRNA:   3'- gGGACCgUUUGUCCCgUCUC--------UCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.