Results 1 - 20 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29135 | 3' | -55.3 | NC_006146.1 | + | 155893 | 1.13 | 0.002326 |
Target: 5'- uCCCUGGCAAACAGGGCAGAGAGACGGg -3' miRNA: 3'- -GGGACCGUUUGUCCCGUCUCUCUGCC- -5' |
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29135 | 3' | -55.3 | NC_006146.1 | + | 166687 | 0.8 | 0.280239 |
Target: 5'- gCCUGGCAggggggaGACGGGGCAauGGGAGGgGGg -3' miRNA: 3'- gGGACCGU-------UUGUCCCGU--CUCUCUgCC- -5' |
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29135 | 3' | -55.3 | NC_006146.1 | + | 141475 | 0.79 | 0.352207 |
Target: 5'- gCCUGGCcuGCGGGGgaCAGGGuGGACGGg -3' miRNA: 3'- gGGACCGuuUGUCCC--GUCUC-UCUGCC- -5' |
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29135 | 3' | -55.3 | NC_006146.1 | + | 153786 | 0.79 | 0.352207 |
Target: 5'- gCCUGGCcuGCGGGGgaCAGGGuGGACGGg -3' miRNA: 3'- gGGACCGuuUGUCCC--GUCUC-UCUGCC- -5' |
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29135 | 3' | -55.3 | NC_006146.1 | + | 144553 | 0.79 | 0.352207 |
Target: 5'- gCCUGGCcuGCGGGGgaCAGGGuGGACGGg -3' miRNA: 3'- gGGACCGuuUGUCCC--GUCUC-UCUGCC- -5' |
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29135 | 3' | -55.3 | NC_006146.1 | + | 150708 | 0.79 | 0.352207 |
Target: 5'- gCCUGGCcuGCGGGGgaCAGGGuGGACGGg -3' miRNA: 3'- gGGACCGuuUGUCCC--GUCUC-UCUGCC- -5' |
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29135 | 3' | -55.3 | NC_006146.1 | + | 156864 | 0.79 | 0.352207 |
Target: 5'- gCCUGGCcuGCGGGGgaCAGGGuGGACGGg -3' miRNA: 3'- gGGACCGuuUGUCCC--GUCUC-UCUGCC- -5' |
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29135 | 3' | -55.3 | NC_006146.1 | + | 147631 | 0.79 | 0.352207 |
Target: 5'- gCCUGGCcuGCGGGGgaCAGGGuGGACGGg -3' miRNA: 3'- gGGACCGuuUGUCCC--GUCUC-UCUGCC- -5' |
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29135 | 3' | -55.3 | NC_006146.1 | + | 55012 | 0.78 | 0.392389 |
Target: 5'- cCCCgGGCGggAugGGGGCGGGcGGGAUGGg -3' miRNA: 3'- -GGGaCCGU--UugUCCCGUCU-CUCUGCC- -5' |
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29135 | 3' | -55.3 | NC_006146.1 | + | 57103 | 0.77 | 0.400777 |
Target: 5'- gUCCUGGCcAGCGGGG-AGAGGGugGa -3' miRNA: 3'- -GGGACCGuUUGUCCCgUCUCUCugCc -5' |
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29135 | 3' | -55.3 | NC_006146.1 | + | 340 | 0.77 | 0.400777 |
Target: 5'- uCCC-GGCcAACGGGaGCAGAGGGAgGGc -3' miRNA: 3'- -GGGaCCGuUUGUCC-CGUCUCUCUgCC- -5' |
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29135 | 3' | -55.3 | NC_006146.1 | + | 168538 | 0.77 | 0.42661 |
Target: 5'- cCCCUGG-GGGCcucgGGGGCGGAGGGGgGGg -3' miRNA: 3'- -GGGACCgUUUG----UCCCGUCUCUCUgCC- -5' |
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29135 | 3' | -55.3 | NC_006146.1 | + | 169470 | 0.77 | 0.42661 |
Target: 5'- cCCCUGG-GGGCcucgGGGGCGGAGGGGgGGg -3' miRNA: 3'- -GGGACCgUUUG----UCCCGUCUCUCUgCC- -5' |
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29135 | 3' | -55.3 | NC_006146.1 | + | 167606 | 0.77 | 0.42661 |
Target: 5'- cCCCUGG-GGGCcucgGGGGCGGAGGGGgGGg -3' miRNA: 3'- -GGGACCgUUUG----UCCCGUCUCUCUgCC- -5' |
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29135 | 3' | -55.3 | NC_006146.1 | + | 170401 | 0.77 | 0.42661 |
Target: 5'- cCCCUGG-GGGCcucgGGGGCGGAGGGGgGGg -3' miRNA: 3'- -GGGACCgUUUG----UCCCGUCUCUCUgCC- -5' |
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29135 | 3' | -55.3 | NC_006146.1 | + | 56810 | 0.77 | 0.444371 |
Target: 5'- gUCUGGCGGGCGGGGCuucuGGcccccGAGGCGGc -3' miRNA: 3'- gGGACCGUUUGUCCCGu---CU-----CUCUGCC- -5' |
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29135 | 3' | -55.3 | NC_006146.1 | + | 43586 | 0.76 | 0.481091 |
Target: 5'- uCCC-GGgGAGCGGGGCGG-GAGGcCGGg -3' miRNA: 3'- -GGGaCCgUUUGUCCCGUCuCUCU-GCC- -5' |
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29135 | 3' | -55.3 | NC_006146.1 | + | 33631 | 0.76 | 0.481091 |
Target: 5'- aCCUGGaaggcAACGGGGguGGGGGAgGGa -3' miRNA: 3'- gGGACCgu---UUGUCCCguCUCUCUgCC- -5' |
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29135 | 3' | -55.3 | NC_006146.1 | + | 40469 | 0.76 | 0.481091 |
Target: 5'- gCCUGGUgggugAAGgGGGGCAGAGGGGCc- -3' miRNA: 3'- gGGACCG-----UUUgUCCCGUCUCUCUGcc -5' |
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29135 | 3' | -55.3 | NC_006146.1 | + | 33818 | 0.76 | 0.481091 |
Target: 5'- aCCUGGaaggcAACGGGGguGGGGGAgGGa -3' miRNA: 3'- gGGACCgu---UUGUCCCguCUCUCUgCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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