miRNA display CGI


Results 1 - 20 of 309 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29135 3' -55.3 NC_006146.1 + 1 0.67 0.930686
Target:  5'- cCCCUu---AACAGGGgGGAGGGGgGGu -3'
miRNA:   3'- -GGGAccguUUGUCCCgUCUCUCUgCC- -5'
29135 3' -55.3 NC_006146.1 + 340 0.77 0.400777
Target:  5'- uCCC-GGCcAACGGGaGCAGAGGGAgGGc -3'
miRNA:   3'- -GGGaCCGuUUGUCC-CGUCUCUCUgCC- -5'
29135 3' -55.3 NC_006146.1 + 1271 0.7 0.79452
Target:  5'- uCCCc-GCcAACGGGaGCAGAGGGAgGGc -3'
miRNA:   3'- -GGGacCGuUUGUCC-CGUCUCUCUgCC- -5'
29135 3' -55.3 NC_006146.1 + 2203 0.7 0.79452
Target:  5'- uCCCc-GCcAACGGGaGCAGAGGGAgGGc -3'
miRNA:   3'- -GGGacCGuUUGUCC-CGUCUCUCUgCC- -5'
29135 3' -55.3 NC_006146.1 + 3135 0.7 0.79452
Target:  5'- uCCCc-GCcAACGGGaGCAGAGGGAgGGc -3'
miRNA:   3'- -GGGacCGuUUGUCC-CGUCUCUCUgCC- -5'
29135 3' -55.3 NC_006146.1 + 3755 0.75 0.526023
Target:  5'- gCCCUGGCAcaGugcccacuuucuacGCGGGGgGGGGGGGgGGg -3'
miRNA:   3'- -GGGACCGU--U--------------UGUCCCgUCUCUCUgCC- -5'
29135 3' -55.3 NC_006146.1 + 4667 0.67 0.908455
Target:  5'- gUCCUGG---GCcGGGUGGGcGAGGCGGg -3'
miRNA:   3'- -GGGACCguuUGuCCCGUCU-CUCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 5642 0.69 0.860828
Target:  5'- gCCaUGGCG---GGGGaCAGGGGGACGa -3'
miRNA:   3'- gGG-ACCGUuugUCCC-GUCUCUCUGCc -5'
29135 3' -55.3 NC_006146.1 + 6064 0.67 0.925479
Target:  5'- --gUGGU-AACGGaGGaCAGGGAGAUGGg -3'
miRNA:   3'- gggACCGuUUGUC-CC-GUCUCUCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 12871 0.66 0.93566
Target:  5'- -gCUGGguGGCuGGGCAGGccGGGucuCGGg -3'
miRNA:   3'- ggGACCguUUGuCCCGUCU--CUCu--GCC- -5'
29135 3' -55.3 NC_006146.1 + 13309 0.68 0.895953
Target:  5'- cCCCacgugcugGGCAc-CAGGGCGGuGGAGuCGGc -3'
miRNA:   3'- -GGGa-------CCGUuuGUCCCGUC-UCUCuGCC- -5'
29135 3' -55.3 NC_006146.1 + 13374 0.66 0.93566
Target:  5'- gCCCUcggGGCc--CAGGGCcccuaguccAGAG-GACGGa -3'
miRNA:   3'- -GGGA---CCGuuuGUCCCG---------UCUCuCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 13863 0.66 0.953243
Target:  5'- -aCUGGCGAccauugccuccaGCGGGaUAGAGuGGACGGc -3'
miRNA:   3'- ggGACCGUU------------UGUCCcGUCUC-UCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 14018 0.71 0.757677
Target:  5'- -gCUGGaAGGCggAGGGCAGGGAGcagGCGGg -3'
miRNA:   3'- ggGACCgUUUG--UCCCGUCUCUC---UGCC- -5'
29135 3' -55.3 NC_006146.1 + 14953 0.7 0.789127
Target:  5'- aCUCUGGCAgccaugcuacgguucAAC-GGGCaAGGGAGAgGGc -3'
miRNA:   3'- -GGGACCGU---------------UUGuCCCG-UCUCUCUgCC- -5'
29135 3' -55.3 NC_006146.1 + 15039 0.66 0.942232
Target:  5'- gCCUGGC---CAGGGCccgccgggccugcgaGGAGGcacuGGCGGg -3'
miRNA:   3'- gGGACCGuuuGUCCCG---------------UCUCU----CUGCC- -5'
29135 3' -55.3 NC_006146.1 + 15574 0.7 0.812116
Target:  5'- uCCCUGGgaGGACAGGcGCGucggcGAGGGcGCGGc -3'
miRNA:   3'- -GGGACCg-UUUGUCC-CGU-----CUCUC-UGCC- -5'
29135 3' -55.3 NC_006146.1 + 16452 0.66 0.93566
Target:  5'- gCCCUcggGGCc--CAGGGCcccuaguccAGAG-GACGGa -3'
miRNA:   3'- -GGGA---CCGuuuGUCCCG---------UCUCuCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 18973 0.67 0.930686
Target:  5'- cCCCUagagagGGC-GGCAGGGCcGGAGccagaccccAGugGGg -3'
miRNA:   3'- -GGGA------CCGuUUGUCCCG-UCUC---------UCugCC- -5'
29135 3' -55.3 NC_006146.1 + 19026 0.66 0.93566
Target:  5'- -gCUGGguGGCuGGGCAGGccGGGucuCGGg -3'
miRNA:   3'- ggGACCguUUGuCCCGUCU--CUCu--GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.