miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29135 3' -55.3 NC_006146.1 + 155893 1.13 0.002326
Target:  5'- uCCCUGGCAAACAGGGCAGAGAGACGGg -3'
miRNA:   3'- -GGGACCGUUUGUCCCGUCUCUCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 150486 0.73 0.649115
Target:  5'- cCCCUGGUAGccgucccuguCGGaGGCGGAGGGcAUGGg -3'
miRNA:   3'- -GGGACCGUUu---------GUC-CCGUCUCUC-UGCC- -5'
29135 3' -55.3 NC_006146.1 + 170512 0.72 0.669301
Target:  5'- cCCCagcgcgcGGCGGGCGGGGCcugAGGGGGcGCGGc -3'
miRNA:   3'- -GGGa------CCGUUUGUCCCG---UCUCUC-UGCC- -5'
29135 3' -55.3 NC_006146.1 + 90071 0.66 0.957072
Target:  5'- gCCUaggaGGCGGuGCAGGGgGGAGcAGugGa -3'
miRNA:   3'- gGGA----CCGUU-UGUCCCgUCUC-UCugCc -5'
29135 3' -55.3 NC_006146.1 + 168538 0.77 0.42661
Target:  5'- cCCCUGG-GGGCcucgGGGGCGGAGGGGgGGg -3'
miRNA:   3'- -GGGACCgUUUG----UCCCGUCUCUCUgCC- -5'
29135 3' -55.3 NC_006146.1 + 169470 0.77 0.42661
Target:  5'- cCCCUGG-GGGCcucgGGGGCGGAGGGGgGGg -3'
miRNA:   3'- -GGGACCgUUUG----UCCCGUCUCUCUgCC- -5'
29135 3' -55.3 NC_006146.1 + 56810 0.77 0.444371
Target:  5'- gUCUGGCGGGCGGGGCuucuGGcccccGAGGCGGc -3'
miRNA:   3'- gGGACCGUUUGUCCCGu---CU-----CUCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 33631 0.76 0.481091
Target:  5'- aCCUGGaaggcAACGGGGguGGGGGAgGGa -3'
miRNA:   3'- gGGACCgu---UUGUCCCguCUCUCUgCC- -5'
29135 3' -55.3 NC_006146.1 + 168345 0.76 0.487669
Target:  5'- gCCUGGCGggGGCcagcgcggggucccGGGGCGGGGGGuCGGg -3'
miRNA:   3'- gGGACCGU--UUG--------------UCCCGUCUCUCuGCC- -5'
29135 3' -55.3 NC_006146.1 + 146854 0.73 0.62584
Target:  5'- gCCUGGCu--CGGGGCcgcgucaccccgccAGGGGGACGa -3'
miRNA:   3'- gGGACCGuuuGUCCCG--------------UCUCUCUGCc -5'
29135 3' -55.3 NC_006146.1 + 170208 0.76 0.487669
Target:  5'- gCCUGGCGggGGCcagcgcggggucccGGGGCGGGGGGuCGGg -3'
miRNA:   3'- gGGACCGU--UUG--------------UCCCGUCUCUCuGCC- -5'
29135 3' -55.3 NC_006146.1 + 167413 0.76 0.487669
Target:  5'- gCCUGGCGggGGCcagcgcggggucccGGGGCGGGGGGuCGGg -3'
miRNA:   3'- gGGACCGU--UUG--------------UCCCGUCUCUCuGCC- -5'
29135 3' -55.3 NC_006146.1 + 166687 0.8 0.280239
Target:  5'- gCCUGGCAggggggaGACGGGGCAauGGGAGGgGGg -3'
miRNA:   3'- gGGACCGU-------UUGUCCCGU--CUCUCUgCC- -5'
29135 3' -55.3 NC_006146.1 + 114964 0.74 0.568449
Target:  5'- gCCCUGGa----GGaGGCAGAGAgGGCGGg -3'
miRNA:   3'- -GGGACCguuugUC-CCGUCUCU-CUGCC- -5'
29135 3' -55.3 NC_006146.1 + 55012 0.78 0.392389
Target:  5'- cCCCgGGCGggAugGGGGCGGGcGGGAUGGg -3'
miRNA:   3'- -GGGaCCGU--UugUCCCGUCU-CUCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 33818 0.76 0.481091
Target:  5'- aCCUGGaaggcAACGGGGguGGGGGAgGGa -3'
miRNA:   3'- gGGACCgu---UUGUCCCguCUCUCUgCC- -5'
29135 3' -55.3 NC_006146.1 + 34004 0.74 0.598554
Target:  5'- aCCUGGaAGGCAGGGgGGGGgucggggcAGGCGGg -3'
miRNA:   3'- gGGACCgUUUGUCCCgUCUC--------UCUGCC- -5'
29135 3' -55.3 NC_006146.1 + 137834 0.72 0.669301
Target:  5'- aCCUGGaAGGCAGGGgGGcucGGGGugGGu -3'
miRNA:   3'- gGGACCgUUUGUCCCgUC---UCUCugCC- -5'
29135 3' -55.3 NC_006146.1 + 167606 0.77 0.42661
Target:  5'- cCCCUGG-GGGCcucgGGGGCGGAGGGGgGGg -3'
miRNA:   3'- -GGGACCgUUUG----UCCCGUCUCUCUgCC- -5'
29135 3' -55.3 NC_006146.1 + 170401 0.77 0.42661
Target:  5'- cCCCUGG-GGGCcucgGGGGCGGAGGGGgGGg -3'
miRNA:   3'- -GGGACCgUUUG----UCCCGUCUCUCUgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.