miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29136 5' -55.1 NC_006146.1 + 11544 0.66 0.943954
Target:  5'- -gUCAGCUacgcccccgCCAUGCUG-GAGGCG-GCg -3'
miRNA:   3'- gaGGUCGG---------GGUACGACaCUCUGUaCG- -5'
29136 5' -55.1 NC_006146.1 + 5236 0.66 0.943954
Target:  5'- -gCCGGCCUCGggGCUGUGGGGu---- -3'
miRNA:   3'- gaGGUCGGGGUa-CGACACUCUguacg -5'
29136 5' -55.1 NC_006146.1 + 51924 0.66 0.939307
Target:  5'- -cCCAGCUCCuccuuaCcGUGAGACAUGg -3'
miRNA:   3'- gaGGUCGGGGuac---GaCACUCUGUACg -5'
29136 5' -55.1 NC_006146.1 + 118653 0.66 0.93442
Target:  5'- uCUCCGGCCgucuCCAUGagcaaUGgugGGGACGgaaaUGCg -3'
miRNA:   3'- -GAGGUCGG----GGUACg----ACa--CUCUGU----ACG- -5'
29136 5' -55.1 NC_006146.1 + 165470 0.66 0.92929
Target:  5'- uUCCAGUCCCAga-UGUGAGcccugaauccaGCAggGCa -3'
miRNA:   3'- gAGGUCGGGGUacgACACUC-----------UGUa-CG- -5'
29136 5' -55.1 NC_006146.1 + 110297 0.66 0.923918
Target:  5'- uCUCCgcAGCCCCAgcagGCaaacacgGAGGcCAUGCu -3'
miRNA:   3'- -GAGG--UCGGGGUa---CGaca----CUCU-GUACG- -5'
29136 5' -55.1 NC_006146.1 + 113693 0.66 0.923918
Target:  5'- -cCCGGCCUCcgGCccgGGGACGgcgGCg -3'
miRNA:   3'- gaGGUCGGGGuaCGacaCUCUGUa--CG- -5'
29136 5' -55.1 NC_006146.1 + 85093 0.66 0.923918
Target:  5'- -aCCAGCCUccccagugauguCAUGgUuUGGGACGUGCc -3'
miRNA:   3'- gaGGUCGGG------------GUACgAcACUCUGUACG- -5'
29136 5' -55.1 NC_006146.1 + 133252 0.66 0.918303
Target:  5'- -gUCAGCCCCAgggacGCUGUccacGAGAag-GCa -3'
miRNA:   3'- gaGGUCGGGGUa----CGACA----CUCUguaCG- -5'
29136 5' -55.1 NC_006146.1 + 156065 0.66 0.918303
Target:  5'- cCUCCcgcGGCCCCggGCcc-GAGACcGUGCc -3'
miRNA:   3'- -GAGG---UCGGGGuaCGacaCUCUG-UACG- -5'
29136 5' -55.1 NC_006146.1 + 2662 0.66 0.91599
Target:  5'- aUCCAGCCCaacugcccucaGCUGUuuauGAGACG-GCa -3'
miRNA:   3'- gAGGUCGGGgua--------CGACA----CUCUGUaCG- -5'
29136 5' -55.1 NC_006146.1 + 72583 0.67 0.912447
Target:  5'- -cCCGGCCCCGUGCc---AGACG-GCc -3'
miRNA:   3'- gaGGUCGGGGUACGacacUCUGUaCG- -5'
29136 5' -55.1 NC_006146.1 + 144216 0.67 0.90635
Target:  5'- -cCCGGCCCUAgacaggGCUGUcuGACAgGCc -3'
miRNA:   3'- gaGGUCGGGGUa-----CGACAcuCUGUaCG- -5'
29136 5' -55.1 NC_006146.1 + 147294 0.67 0.90635
Target:  5'- -cCCGGCCCUAgacaggGCUGUcuGACAgGCc -3'
miRNA:   3'- gaGGUCGGGGUa-----CGACAcuCUGUaCG- -5'
29136 5' -55.1 NC_006146.1 + 137980 0.67 0.90635
Target:  5'- cCUCCcgggGGCCCg--GCgggGUGGGGgGUGCg -3'
miRNA:   3'- -GAGG----UCGGGguaCGa--CACUCUgUACG- -5'
29136 5' -55.1 NC_006146.1 + 150372 0.67 0.90635
Target:  5'- -cCCGGCCCUAgacaggGCUGUcuGACAgGCc -3'
miRNA:   3'- gaGGUCGGGGUa-----CGACAcuCUGUaCG- -5'
29136 5' -55.1 NC_006146.1 + 153450 0.67 0.90635
Target:  5'- -cCCGGCCCUAgacaggGCUGUcuGACAgGCc -3'
miRNA:   3'- gaGGUCGGGGUa-----CGACAcuCUGUaCG- -5'
29136 5' -55.1 NC_006146.1 + 156528 0.67 0.90635
Target:  5'- -cCCGGCCCUAgacaggGCUGUcuGACAgGCc -3'
miRNA:   3'- gaGGUCGGGGUa-----CGACAcuCUGUaCG- -5'
29136 5' -55.1 NC_006146.1 + 35975 0.67 0.900014
Target:  5'- cCUCCAGCCUCucUGCgg-GGGACAc-- -3'
miRNA:   3'- -GAGGUCGGGGu-ACGacaCUCUGUacg -5'
29136 5' -55.1 NC_006146.1 + 161840 0.67 0.900014
Target:  5'- -gCCAcGCCCCGUGg---GAGACcgGCu -3'
miRNA:   3'- gaGGU-CGGGGUACgacaCUCUGuaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.