miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29136 5' -55.1 NC_006146.1 + 165470 0.66 0.92929
Target:  5'- uUCCAGUCCCAga-UGUGAGcccugaauccaGCAggGCa -3'
miRNA:   3'- gAGGUCGGGGUacgACACUC-----------UGUa-CG- -5'
29136 5' -55.1 NC_006146.1 + 164624 0.74 0.517931
Target:  5'- aUUCAGCCCCGUGCUGUGAu------ -3'
miRNA:   3'- gAGGUCGGGGUACGACACUcuguacg -5'
29136 5' -55.1 NC_006146.1 + 161840 0.67 0.900014
Target:  5'- -gCCAcGCCCCGUGg---GAGACcgGCu -3'
miRNA:   3'- gaGGU-CGGGGUACgacaCUCUGuaCG- -5'
29136 5' -55.1 NC_006146.1 + 161006 0.78 0.340674
Target:  5'- -cUCAGCCCCAUGCcGUGuG-CAUGCg -3'
miRNA:   3'- gaGGUCGGGGUACGaCACuCuGUACG- -5'
29136 5' -55.1 NC_006146.1 + 158282 0.68 0.856413
Target:  5'- -cCCAGCCCCggGUUGUcauucucGuAGcACAUGCa -3'
miRNA:   3'- gaGGUCGGGGuaCGACA-------C-UC-UGUACG- -5'
29136 5' -55.1 NC_006146.1 + 156528 0.67 0.90635
Target:  5'- -cCCGGCCCUAgacaggGCUGUcuGACAgGCc -3'
miRNA:   3'- gaGGUCGGGGUa-----CGACAcuCUGUaCG- -5'
29136 5' -55.1 NC_006146.1 + 156389 1.12 0.002141
Target:  5'- uCUCCAGCCCCAUGCUGUGAGACAUGCa -3'
miRNA:   3'- -GAGGUCGGGGUACGACACUCUGUACG- -5'
29136 5' -55.1 NC_006146.1 + 156065 0.66 0.918303
Target:  5'- cCUCCcgcGGCCCCggGCcc-GAGACcGUGCc -3'
miRNA:   3'- -GAGG---UCGGGGuaCGacaCUCUG-UACG- -5'
29136 5' -55.1 NC_006146.1 + 155199 0.72 0.654344
Target:  5'- uCUCCucggccaguGGCCCCGUgaugaagguguacagGCUGUGggucaGGGCGUGCa -3'
miRNA:   3'- -GAGG---------UCGGGGUA---------------CGACAC-----UCUGUACG- -5'
29136 5' -55.1 NC_006146.1 + 153450 0.67 0.90635
Target:  5'- -cCCGGCCCUAgacaggGCUGUcuGACAgGCc -3'
miRNA:   3'- gaGGUCGGGGUa-----CGACAcuCUGUaCG- -5'
29136 5' -55.1 NC_006146.1 + 150372 0.67 0.90635
Target:  5'- -cCCGGCCCUAgacaggGCUGUcuGACAgGCc -3'
miRNA:   3'- gaGGUCGGGGUa-----CGACAcuCUGUaCG- -5'
29136 5' -55.1 NC_006146.1 + 147294 0.67 0.90635
Target:  5'- -cCCGGCCCUAgacaggGCUGUcuGACAgGCc -3'
miRNA:   3'- gaGGUCGGGGUa-----CGACAcuCUGUaCG- -5'
29136 5' -55.1 NC_006146.1 + 146621 0.68 0.8493
Target:  5'- gUCCAGCCCCcgGCcaggGUcacGAGGCcUGg -3'
miRNA:   3'- gAGGUCGGGGuaCGa---CA---CUCUGuACg -5'
29136 5' -55.1 NC_006146.1 + 144216 0.67 0.90635
Target:  5'- -cCCGGCCCUAgacaggGCUGUcuGACAgGCc -3'
miRNA:   3'- gaGGUCGGGGUa-----CGACAcuCUGUaCG- -5'
29136 5' -55.1 NC_006146.1 + 137980 0.67 0.90635
Target:  5'- cCUCCcgggGGCCCg--GCgggGUGGGGgGUGCg -3'
miRNA:   3'- -GAGG----UCGGGguaCGa--CACUCUgUACG- -5'
29136 5' -55.1 NC_006146.1 + 136838 0.69 0.82445
Target:  5'- -cCCGGCCCCGUGCcacGGGACccccgGCc -3'
miRNA:   3'- gaGGUCGGGGUACGacaCUCUGua---CG- -5'
29136 5' -55.1 NC_006146.1 + 133252 0.66 0.918303
Target:  5'- -gUCAGCCCCAgggacGCUGUccacGAGAag-GCa -3'
miRNA:   3'- gaGGUCGGGGUa----CGACA----CUCUguaCG- -5'
29136 5' -55.1 NC_006146.1 + 128458 0.7 0.741252
Target:  5'- -cCCGGCCgCCAUGCUG-GcGGCGcGCa -3'
miRNA:   3'- gaGGUCGG-GGUACGACaCuCUGUaCG- -5'
29136 5' -55.1 NC_006146.1 + 118653 0.66 0.93442
Target:  5'- uCUCCGGCCgucuCCAUGagcaaUGgugGGGACGgaaaUGCg -3'
miRNA:   3'- -GAGGUCGG----GGUACg----ACa--CUCUGU----ACG- -5'
29136 5' -55.1 NC_006146.1 + 117095 0.69 0.82445
Target:  5'- uUCCAGCCCCccGCUaUG-GACGccGCg -3'
miRNA:   3'- gAGGUCGGGGuaCGAcACuCUGUa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.