Results 21 - 40 of 307 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29137 | 3' | -64.1 | NC_006146.1 | + | 155838 | 0.66 | 0.547949 |
Target: 5'- cGGaGCCcCCGCCAgugccuccucGCAGgCCCGGCGg- -3' miRNA: 3'- -UC-CGGcGGCGGU----------CGUCgGGGCUGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 99993 | 0.66 | 0.54605 |
Target: 5'- uGGGCgGUgguuguugcugacauCGCCcaucuucccccggggAGCAGCCCUGACAa- -3' miRNA: 3'- -UCCGgCG---------------GCGG---------------UCGUCGGGGCUGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 67208 | 0.66 | 0.538476 |
Target: 5'- uGGCCGUgGCCGGUcGCCuggCCGGCc-- -3' miRNA: 3'- uCCGGCGgCGGUCGuCGG---GGCUGuag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 118132 | 0.66 | 0.538476 |
Target: 5'- cGGCCGCuuCGCCGGCA-UCCaguGCGUCa -3' miRNA: 3'- uCCGGCG--GCGGUCGUcGGGgc-UGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 73170 | 0.66 | 0.538476 |
Target: 5'- gAGG-CGCC-CCAGCAcCuCCCGGCAUa -3' miRNA: 3'- -UCCgGCGGcGGUCGUcG-GGGCUGUAg -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 23192 | 0.66 | 0.538476 |
Target: 5'- cAGGCCccGCCGCCuuccuGGCCCUGuugcuCAUCc -3' miRNA: 3'- -UCCGG--CGGCGGucg--UCGGGGCu----GUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 115621 | 0.66 | 0.538476 |
Target: 5'- cGGCUGCUGCCcaccGCgAGCCCC-ACGa- -3' miRNA: 3'- uCCGGCGGCGGu---CG-UCGGGGcUGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 21251 | 0.66 | 0.52906 |
Target: 5'- cAGGCgCGCUGCCGGCGcGUgCUCGACc-- -3' miRNA: 3'- -UCCG-GCGGCGGUCGU-CG-GGGCUGuag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 55547 | 0.66 | 0.52906 |
Target: 5'- -cGCCGCCacGCCGGCcaggaaGGCCUCGAUg-- -3' miRNA: 3'- ucCGGCGG--CGGUCG------UCGGGGCUGuag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 153947 | 0.66 | 0.52906 |
Target: 5'- aAGGcCCGCCGCUccccguugGGCAcgguGCCUCGAUuGUCg -3' miRNA: 3'- -UCC-GGCGGCGG--------UCGU----CGGGGCUG-UAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 127387 | 0.66 | 0.52906 |
Target: 5'- uGGUgGCCGgCAGCcuGGCCCgGACc-- -3' miRNA: 3'- uCCGgCGGCgGUCG--UCGGGgCUGuag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 76384 | 0.66 | 0.52906 |
Target: 5'- aGGGCgCGCCGggggagggaCCGGgGGCgCCGACGg- -3' miRNA: 3'- -UCCG-GCGGC---------GGUCgUCGgGGCUGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 94948 | 0.66 | 0.528122 |
Target: 5'- uGGCCGCUGCgGuagagggggguguGCAGCCa-GGCAUUa -3' miRNA: 3'- uCCGGCGGCGgU-------------CGUCGGggCUGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 81777 | 0.66 | 0.526247 |
Target: 5'- uGGCCGCCcggucuccggggguGCCaccuggGGCAGUgCCGguaGCAUCg -3' miRNA: 3'- uCCGGCGG--------------CGG------UCGUCGgGGC---UGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 33380 | 0.66 | 0.523439 |
Target: 5'- nGGGCCGCUGCCccgcuccggguggggGGUGGCCCgccugGGCAc- -3' miRNA: 3'- -UCCGGCGGCGG---------------UCGUCGGGg----CUGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 136726 | 0.66 | 0.519705 |
Target: 5'- cGGCCGCUGCCGGguccgcugccCGGUCCUGGa--- -3' miRNA: 3'- uCCGGCGGCGGUC----------GUCGGGGCUguag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 67626 | 0.66 | 0.519705 |
Target: 5'- cGGCCGagGCCAGUGgaaggcGCCCCcuguaGGCAUCu -3' miRNA: 3'- uCCGGCggCGGUCGU------CGGGG-----CUGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 46643 | 0.66 | 0.519705 |
Target: 5'- gGGGCCGagaCGUacucccugAGCAGuuCCCCGGCGUUg -3' miRNA: 3'- -UCCGGCg--GCGg-------UCGUC--GGGGCUGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 106592 | 0.66 | 0.519705 |
Target: 5'- --aCUGCCGCCAGUacGGCCCCaGGCc-- -3' miRNA: 3'- uccGGCGGCGGUCG--UCGGGG-CUGuag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 46249 | 0.66 | 0.518773 |
Target: 5'- aGGGCCGgUGaagCGGCGGugcgcguCCCCGACGUUu -3' miRNA: 3'- -UCCGGCgGCg--GUCGUC-------GGGGCUGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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