miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 5' -58.1 NC_006146.1 + 45955 0.7 0.6734
Target:  5'- gGGGAC-CUcGACgCUCUcuGCCCGGGGc -3'
miRNA:   3'- -CCCUGaGAuCUG-GAGGucUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 24236 0.7 0.654628
Target:  5'- aGGGAgaCccaagcgaagccaccGGACCUuCCAGGCCCGGGc -3'
miRNA:   3'- -CCCUgaGa--------------UCUGGA-GGUCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 139131 0.71 0.604082
Target:  5'- gGGGGCUgUGGGCCgaaCGGGggcucccguccCCCGGGGg -3'
miRNA:   3'- -CCCUGAgAUCUGGag-GUCU-----------GGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 102008 0.75 0.40069
Target:  5'- aGGGGCUCUGGGCuguCUCCcGGCuaGGGAc -3'
miRNA:   3'- -CCCUGAGAUCUG---GAGGuCUGggCCCU- -5'
29137 5' -58.1 NC_006146.1 + 16040 0.68 0.750527
Target:  5'- gGGGuaGCUCUGGGagucagagagUCggcCUAGGCCCGGGGa -3'
miRNA:   3'- -CCC--UGAGAUCU----------GGa--GGUCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 61924 0.69 0.702784
Target:  5'- uGGGuccCUCcgAGGCCUUCacGGGCCCGGuGAu -3'
miRNA:   3'- -CCCu--GAGa-UCUGGAGG--UCUGGGCC-CU- -5'
29137 5' -58.1 NC_006146.1 + 18080 0.7 0.654628
Target:  5'- aGGGAgaCccaagcgaagccaccGGACCUuCCAGGCCCGGGc -3'
miRNA:   3'- -CCCUgaGa--------------UCUGGA-GGUCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 95470 0.76 0.330793
Target:  5'- gGGGGCUCUgAGAgCUCCGGgucaaACUCGGGGg -3'
miRNA:   3'- -CCCUGAGA-UCUgGAGGUC-----UGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 47305 0.69 0.702784
Target:  5'- cGGGACUCcucccGGGCCUCCuGGAUgauggccuccagCCGGGc -3'
miRNA:   3'- -CCCUGAGa----UCUGGAGG-UCUG------------GGCCCu -5'
29137 5' -58.1 NC_006146.1 + 51846 0.78 0.258125
Target:  5'- gGGGGCUCgGGGCCUggcCCGaGCCCGGGGa -3'
miRNA:   3'- -CCCUGAGaUCUGGA---GGUcUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 21158 0.7 0.654628
Target:  5'- aGGGAgaCccaagcgaagccaccGGACCUuCCAGGCCCGGGc -3'
miRNA:   3'- -CCCUgaGa--------------UCUGGA-GGUCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 15002 0.7 0.674385
Target:  5'- gGGGAgaCccaagcgaagccaccGGACCUuCCAGGCCCGGGc -3'
miRNA:   3'- -CCCUgaGa--------------UCUGGA-GGUCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 27165 0.71 0.623894
Target:  5'- aGGGgucuucuaccucACUCUAGcCCUCCAGGCCCu--- -3'
miRNA:   3'- -CCC------------UGAGAUCuGGAGGUCUGGGcccu -5'
29137 5' -58.1 NC_006146.1 + 14854 0.71 0.623894
Target:  5'- aGGGgucuucuaccucACUCUAGcCCUCCAGGCCCu--- -3'
miRNA:   3'- -CCC------------UGAGAUCuGGAGGUCUGGGcccu -5'
29137 5' -58.1 NC_006146.1 + 59236 0.72 0.555003
Target:  5'- aGGGACau--GGCCUCCauGGGCCUGGGu -3'
miRNA:   3'- -CCCUGagauCUGGAGG--UCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 3726 0.74 0.461156
Target:  5'- aGGGuCUCUGGGggccgcguggcCCUUCAG-CCCGGGGu -3'
miRNA:   3'- -CCCuGAGAUCU-----------GGAGGUCuGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 28352 0.68 0.750527
Target:  5'- gGGGuaGCUCUGGGagucagagagUCggcCUAGGCCCGGGGa -3'
miRNA:   3'- -CCC--UGAGAUCU----------GGa--GGUCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 19118 0.68 0.750527
Target:  5'- gGGGuaGCUCUGGGagucagagagUCggcCUAGGCCCGGGGa -3'
miRNA:   3'- -CCC--UGAGAUCU----------GGa--GGUCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 33194 0.69 0.731664
Target:  5'- cGGuC-CUGGGCCUCCGGGugcuccuggugcUCCGGGGc -3'
miRNA:   3'- cCCuGaGAUCUGGAGGUCU------------GGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 150000 0.69 0.702784
Target:  5'- cGGACUCaGGGCCUCCAcgaaggccuuGGCCCGc-- -3'
miRNA:   3'- cCCUGAGaUCUGGAGGU----------CUGGGCccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.