miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 5' -58.1 NC_006146.1 + 41424 0.7 0.633813
Target:  5'- gGGGGCacccgaguuuUCUAGGCUcCUAGAUCUGGGGc -3'
miRNA:   3'- -CCCUG----------AGAUCUGGaGGUCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 156820 1.11 0.001876
Target:  5'- gGGGACUCUAGACCUCCAGACCCGGGAg -3'
miRNA:   3'- -CCCUGAGAUCUGGAGGUCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 51846 0.78 0.258125
Target:  5'- gGGGGCUCgGGGCCUggcCCGaGCCCGGGGa -3'
miRNA:   3'- -CCCUGAGaUCUGGA---GGUcUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 45530 0.71 0.574526
Target:  5'- gGGGGC-CUGGGCCUCCuuGGGCuuGGc- -3'
miRNA:   3'- -CCCUGaGAUCUGGAGG--UCUGggCCcu -5'
29137 5' -58.1 NC_006146.1 + 139131 0.71 0.604082
Target:  5'- gGGGGCUgUGGGCCgaaCGGGggcucccguccCCCGGGGg -3'
miRNA:   3'- -CCCUGAgAUCUGGag-GUCU-----------GGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 95470 0.76 0.330793
Target:  5'- gGGGGCUCUgAGAgCUCCGGgucaaACUCGGGGg -3'
miRNA:   3'- -CCCUGAGA-UCUgGAGGUC-----UGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 113675 0.73 0.475646
Target:  5'- aGGuGGCUCgggcccgggcccGGCCUCCGG-CCCGGGGa -3'
miRNA:   3'- -CC-CUGAGau----------CUGGAGGUCuGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 158271 0.72 0.555003
Target:  5'- gGGGACUCUGGc---CCAGcCCCGGGu -3'
miRNA:   3'- -CCCUGAGAUCuggaGGUCuGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 27165 0.71 0.623894
Target:  5'- aGGGgucuucuaccucACUCUAGcCCUCCAGGCCCu--- -3'
miRNA:   3'- -CCC------------UGAGAUCuGGAGGUCUGGGcccu -5'
29137 5' -58.1 NC_006146.1 + 21158 0.7 0.654628
Target:  5'- aGGGAgaCccaagcgaagccaccGGACCUuCCAGGCCCGGGc -3'
miRNA:   3'- -CCCUgaGa--------------UCUGGA-GGUCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 44970 0.66 0.882032
Target:  5'- gGGGACUC--GACCgcgguggCCGGACCCu--- -3'
miRNA:   3'- -CCCUGAGauCUGGa------GGUCUGGGcccu -5'
29137 5' -58.1 NC_006146.1 + 3726 0.74 0.461156
Target:  5'- aGGGuCUCUGGGggccgcguggcCCUUCAG-CCCGGGGu -3'
miRNA:   3'- -CCCuGAGAUCU-----------GGAGGUCuGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 102008 0.75 0.40069
Target:  5'- aGGGGCUCUGGGCuguCUCCcGGCuaGGGAc -3'
miRNA:   3'- -CCCUGAGAUCUG---GAGGuCUGggCCCU- -5'
29137 5' -58.1 NC_006146.1 + 21009 0.71 0.623894
Target:  5'- aGGGgucuucuaccucACUCUAGcCCUCCAGGCCCu--- -3'
miRNA:   3'- -CCC------------UGAGAUCuGGAGGUCUGGGcccu -5'
29137 5' -58.1 NC_006146.1 + 24087 0.71 0.623894
Target:  5'- aGGGgucuucuaccucACUCUAGcCCUCCAGGCCCu--- -3'
miRNA:   3'- -CCC------------UGAGAUCuGGAGGUCUGGGcccu -5'
29137 5' -58.1 NC_006146.1 + 65183 0.73 0.470185
Target:  5'- uGGGGCUCUuggagcccuAGGCgCUCUggGGGCCCuGGGAg -3'
miRNA:   3'- -CCCUGAGA---------UCUG-GAGG--UCUGGG-CCCU- -5'
29137 5' -58.1 NC_006146.1 + 18080 0.7 0.654628
Target:  5'- aGGGAgaCccaagcgaagccaccGGACCUuCCAGGCCCGGGc -3'
miRNA:   3'- -CCCUgaGa--------------UCUGGA-GGUCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 24236 0.7 0.654628
Target:  5'- aGGGAgaCccaagcgaagccaccGGACCUuCCAGGCCCGGGc -3'
miRNA:   3'- -CCCUgaGa--------------UCUGGA-GGUCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 59236 0.72 0.555003
Target:  5'- aGGGACau--GGCCUCCauGGGCCUGGGu -3'
miRNA:   3'- -CCCUGagauCUGGAGG--UCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 14854 0.71 0.623894
Target:  5'- aGGGgucuucuaccucACUCUAGcCCUCCAGGCCCu--- -3'
miRNA:   3'- -CCC------------UGAGAUCuGGAGGUCUGGGcccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.