miRNA display CGI


Results 1 - 20 of 171 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 5' -58.1 NC_006146.1 + 692 0.66 0.844755
Target:  5'- cGGGACcccgcgCUGGcCCccgCCAGGCCCcggccccgcccucGGGAg -3'
miRNA:   3'- -CCCUGa-----GAUCuGGa--GGUCUGGG-------------CCCU- -5'
29137 5' -58.1 NC_006146.1 + 1623 0.66 0.844755
Target:  5'- cGGGACcccgcgCUGGcCCccgCCAGGCCCcggccccgcccucGGGAg -3'
miRNA:   3'- -CCCUGa-----GAUCuGGa--GGUCUGGG-------------CCCU- -5'
29137 5' -58.1 NC_006146.1 + 2555 0.66 0.844755
Target:  5'- cGGGACcccgcgCUGGcCCccgCCAGGCCCcggccccgcccucGGGAg -3'
miRNA:   3'- -CCCUGa-----GAUCuGGa--GGUCUGGG-------------CCCU- -5'
29137 5' -58.1 NC_006146.1 + 3487 0.66 0.844755
Target:  5'- cGGGACcccgcgCUGGcCCccgCCAGGCCCcggccccgcccucGGGAg -3'
miRNA:   3'- -CCCUGa-----GAUCuGGa--GGUCUGGG-------------CCCU- -5'
29137 5' -58.1 NC_006146.1 + 3726 0.74 0.461156
Target:  5'- aGGGuCUCUGGGggccgcguggcCCUUCAG-CCCGGGGu -3'
miRNA:   3'- -CCCuGAGAUCU-----------GGAGGUCuGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 3833 0.69 0.74114
Target:  5'- cGGGGCacccccgCU-GcCCUaCCGGACCUGGGAu -3'
miRNA:   3'- -CCCUGa------GAuCuGGA-GGUCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 4060 0.66 0.882032
Target:  5'- --cACUCUGaAUCUCCacgcGGACCCGGGc -3'
miRNA:   3'- cccUGAGAUcUGGAGG----UCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 12963 0.7 0.653638
Target:  5'- gGGGuaGCUCUGGAgucagagagUCggcCUAGGCCCGGGGa -3'
miRNA:   3'- -CCC--UGAGAUCU---------GGa--GGUCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 13737 0.66 0.868024
Target:  5'- cGGAg---GGACC-CCGGcaGCCCGGGAg -3'
miRNA:   3'- cCCUgagaUCUGGaGGUC--UGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 14120 0.68 0.759816
Target:  5'- gGGGACUUUAgguGACCcUCGGGCCUGGc- -3'
miRNA:   3'- -CCCUGAGAU---CUGGaGGUCUGGGCCcu -5'
29137 5' -58.1 NC_006146.1 + 14527 0.7 0.683237
Target:  5'- uGGGGCUggAGAgCCUggaCCGGGCCCuGGAg -3'
miRNA:   3'- -CCCUGAgaUCU-GGA---GGUCUGGGcCCU- -5'
29137 5' -58.1 NC_006146.1 + 14743 0.66 0.865854
Target:  5'- cGGGGCUCUuugagaacgaggucAGGCaggCgGGGCUCGGGc -3'
miRNA:   3'- -CCCUGAGA--------------UCUGga-GgUCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 14854 0.71 0.623894
Target:  5'- aGGGgucuucuaccucACUCUAGcCCUCCAGGCCCu--- -3'
miRNA:   3'- -CCC------------UGAGAUCuGGAGGUCUGGGcccu -5'
29137 5' -58.1 NC_006146.1 + 15002 0.7 0.674385
Target:  5'- gGGGAgaCccaagcgaagccaccGGACCUuCCAGGCCCGGGc -3'
miRNA:   3'- -CCCUgaGa--------------UCUGGA-GGUCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 16040 0.68 0.750527
Target:  5'- gGGGuaGCUCUGGGagucagagagUCggcCUAGGCCCGGGGa -3'
miRNA:   3'- -CCC--UGAGAUCU----------GGa--GGUCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 16815 0.66 0.868024
Target:  5'- cGGAg---GGACC-CCGGcaGCCCGGGAg -3'
miRNA:   3'- cCCUgagaUCUGGaGGUC--UGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 17198 0.68 0.759816
Target:  5'- gGGGACUUUAgguGACCcUCGGGCCUGGc- -3'
miRNA:   3'- -CCCUGAGAU---CUGGaGGUCUGGGCCcu -5'
29137 5' -58.1 NC_006146.1 + 17587 0.7 0.683237
Target:  5'- cGGAUgCUGGGCgaCCuGGCCCGGGc -3'
miRNA:   3'- cCCUGaGAUCUGgaGGuCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 17932 0.68 0.759816
Target:  5'- aGGGgucuucuaccucACUCUAGcCCUCCAGGCCUccGAg -3'
miRNA:   3'- -CCC------------UGAGAUCuGGAGGUCUGGGccCU- -5'
29137 5' -58.1 NC_006146.1 + 18080 0.7 0.654628
Target:  5'- aGGGAgaCccaagcgaagccaccGGACCUuCCAGGCCCGGGc -3'
miRNA:   3'- -CCCUgaGa--------------UCUGGA-GGUCUGGGCCCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.