miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 5' -58.1 NC_006146.1 + 14743 0.66 0.865854
Target:  5'- cGGGGCUCUuugagaacgaggucAGGCaggCgGGGCUCGGGc -3'
miRNA:   3'- -CCCUGAGA--------------UCUGga-GgUCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 44970 0.66 0.882032
Target:  5'- gGGGACUC--GACCgcgguggCCGGACCCu--- -3'
miRNA:   3'- -CCCUGAGauCUGGa------GGUCUGGGcccu -5'
29137 5' -58.1 NC_006146.1 + 81647 0.66 0.85322
Target:  5'- cGGGACgUUGGGgCUCggagGGugCCGGGGa -3'
miRNA:   3'- -CCCUGaGAUCUgGAGg---UCugGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 142243 0.66 0.85322
Target:  5'- aGGGGCUCUGGGgCgCCGGucCCCuGGu -3'
miRNA:   3'- -CCCUGAGAUCUgGaGGUCu-GGGcCCu -5'
29137 5' -58.1 NC_006146.1 + 145321 0.66 0.85322
Target:  5'- aGGGGCUCUGGGgCgCCGGucCCCuGGu -3'
miRNA:   3'- -CCCUGAGAUCUgGaGGUCu-GGGcCCu -5'
29137 5' -58.1 NC_006146.1 + 148399 0.66 0.85322
Target:  5'- aGGGGCUCUGGGgCgCCGGucCCCuGGu -3'
miRNA:   3'- -CCCUGAGAUCUgGaGGUCu-GGGcCCu -5'
29137 5' -58.1 NC_006146.1 + 151477 0.66 0.85322
Target:  5'- aGGGGCUCUGGGgCgCCGGucCCCuGGu -3'
miRNA:   3'- -CCCUGAGAUCUgGaGGUCu-GGGcCCu -5'
29137 5' -58.1 NC_006146.1 + 154555 0.66 0.85322
Target:  5'- aGGGGCUCUGGGgCgCCGGucCCCuGGu -3'
miRNA:   3'- -CCCUGAGAUCUgGaGGUCu-GGGcCCu -5'
29137 5' -58.1 NC_006146.1 + 157633 0.66 0.85322
Target:  5'- aGGGGCUCUGGGgCgCCGGucCCCuGGu -3'
miRNA:   3'- -CCCUGAGAUCUgGaGGUCu-GGGcCCu -5'
29137 5' -58.1 NC_006146.1 + 62379 0.66 0.860719
Target:  5'- aGGACg--GGGCCUC--GGCCUGGGGu -3'
miRNA:   3'- cCCUGagaUCUGGAGguCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 84964 0.66 0.860719
Target:  5'- gGGGGCaaagUCccgcAGGCCaUCCAGGCCCcaGGGu -3'
miRNA:   3'- -CCCUG----AGa---UCUGG-AGGUCUGGG--CCCu -5'
29137 5' -58.1 NC_006146.1 + 102366 0.66 0.882032
Target:  5'- cGGGcACUCaaAGGUCUCCGGGuCCuCGGGGa -3'
miRNA:   3'- -CCC-UGAGa-UCUGGAGGUCU-GG-GCCCU- -5'
29137 5' -58.1 NC_006146.1 + 57274 0.66 0.868024
Target:  5'- gGGGGCg--AGACaacaUCCAG-CgCCGGGGc -3'
miRNA:   3'- -CCCUGagaUCUGg---AGGUCuG-GGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 165944 0.66 0.87513
Target:  5'- aGGaGGCUCUcguGGCCcCUGGucCCCGGGGc -3'
miRNA:   3'- -CC-CUGAGAu--CUGGaGGUCu-GGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 28079 0.66 0.87513
Target:  5'- uGGGCUUcgGGGCaUUCUugAGGCCCGGGu -3'
miRNA:   3'- cCCUGAGa-UCUG-GAGG--UCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 141373 0.66 0.87513
Target:  5'- uGGGAgUCUAuGGUaagCCAGGCCCGaGGGu -3'
miRNA:   3'- -CCCUgAGAU-CUGga-GGUCUGGGC-CCU- -5'
29137 5' -58.1 NC_006146.1 + 144451 0.66 0.87513
Target:  5'- uGGGAgUCUAuGGUaagCCAGGCCCGaGGGu -3'
miRNA:   3'- -CCCUgAGAU-CUGga-GGUCUGGGC-CCU- -5'
29137 5' -58.1 NC_006146.1 + 147529 0.66 0.87513
Target:  5'- uGGGAgUCUAuGGUaagCCAGGCCCGaGGGu -3'
miRNA:   3'- -CCCUgAGAU-CUGga-GGUCUGGGC-CCU- -5'
29137 5' -58.1 NC_006146.1 + 150607 0.66 0.87513
Target:  5'- uGGGAgUCUAuGGUaagCCAGGCCCGaGGGu -3'
miRNA:   3'- -CCCUgAGAU-CUGga-GGUCUGGGC-CCU- -5'
29137 5' -58.1 NC_006146.1 + 156762 0.66 0.87513
Target:  5'- uGGGAgUCUAuGGUaagCCAGGCCCGaGGGu -3'
miRNA:   3'- -CCCUgAGAU-CUGga-GGUCUGGGC-CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.