miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 5' -58.1 NC_006146.1 + 156820 1.11 0.001876
Target:  5'- gGGGACUCUAGACCUCCAGACCCGGGAg -3'
miRNA:   3'- -CCCUGAGAUCUGGAGGUCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 51846 0.78 0.258125
Target:  5'- gGGGGCUCgGGGCCUggcCCGaGCCCGGGGa -3'
miRNA:   3'- -CCCUGAGaUCUGGA---GGUcUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 104018 0.76 0.323604
Target:  5'- uGGA-UCUGGAUCUCaAGACCCGGGGg -3'
miRNA:   3'- cCCUgAGAUCUGGAGgUCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 51649 0.76 0.330793
Target:  5'- uGGACUCccaggGGGCCagggCCGGugCCGGGAc -3'
miRNA:   3'- cCCUGAGa----UCUGGa---GGUCugGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 95470 0.76 0.330793
Target:  5'- gGGGGCUCUgAGAgCUCCGGgucaaACUCGGGGg -3'
miRNA:   3'- -CCCUGAGA-UCUgGAGGUC-----UGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 122979 0.75 0.392472
Target:  5'- cGGGACgaucu-CCUCCAGGCCaCGGGGg -3'
miRNA:   3'- -CCCUGagaucuGGAGGUCUGG-GCCCU- -5'
29137 5' -58.1 NC_006146.1 + 102008 0.75 0.40069
Target:  5'- aGGGGCUCUGGGCuguCUCCcGGCuaGGGAc -3'
miRNA:   3'- -CCCUGAGAUCUG---GAGGuCUGggCCCU- -5'
29137 5' -58.1 NC_006146.1 + 3726 0.74 0.461156
Target:  5'- aGGGuCUCUGGGggccgcguggcCCUUCAG-CCCGGGGu -3'
miRNA:   3'- -CCCuGAGAUCU-----------GGAGGUCuGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 65183 0.73 0.470185
Target:  5'- uGGGGCUCUuggagcccuAGGCgCUCUggGGGCCCuGGGAg -3'
miRNA:   3'- -CCCUGAGA---------UCUG-GAGG--UCUGGG-CCCU- -5'
29137 5' -58.1 NC_006146.1 + 113675 0.73 0.475646
Target:  5'- aGGuGGCUCgggcccgggcccGGCCUCCGG-CCCGGGGa -3'
miRNA:   3'- -CC-CUGAGau----------CUGGAGGUCuGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 142044 0.72 0.555003
Target:  5'- aGGACUUUGG-CCUCUGGggccACCCGGGc -3'
miRNA:   3'- cCCUGAGAUCuGGAGGUC----UGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 158271 0.72 0.555003
Target:  5'- gGGGACUCUGGc---CCAGcCCCGGGu -3'
miRNA:   3'- -CCCUGAGAUCuggaGGUCuGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 151278 0.72 0.555003
Target:  5'- aGGACUUUGG-CCUCUGGggccACCCGGGc -3'
miRNA:   3'- cCCUGAGAUCuGGAGGUC----UGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 157434 0.72 0.555003
Target:  5'- aGGACUUUGG-CCUCUGGggccACCCGGGc -3'
miRNA:   3'- cCCUGAGAUCuGGAGGUC----UGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 148200 0.72 0.555003
Target:  5'- aGGACUUUGG-CCUCUGGggccACCCGGGc -3'
miRNA:   3'- cCCUGAGAUCuGGAGGUC----UGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 145122 0.72 0.555003
Target:  5'- aGGACUUUGG-CCUCUGGggccACCCGGGc -3'
miRNA:   3'- cCCUGAGAUCuGGAGGUC----UGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 59236 0.72 0.555003
Target:  5'- aGGGACau--GGCCUCCauGGGCCUGGGu -3'
miRNA:   3'- -CCCUGagauCUGGAGG--UCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 154356 0.72 0.555003
Target:  5'- aGGACUUUGG-CCUCUGGggccACCCGGGc -3'
miRNA:   3'- cCCUGAGAUCuGGAGGUC----UGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 45530 0.71 0.574526
Target:  5'- gGGGGC-CUGGGCCUCCuuGGGCuuGGc- -3'
miRNA:   3'- -CCCUGaGAUCUGGAGG--UCUGggCCcu -5'
29137 5' -58.1 NC_006146.1 + 39931 0.71 0.601115
Target:  5'- gGGGAaguaUCUGGgcGCCUCCuGACCCugaugacacggcugGGGAa -3'
miRNA:   3'- -CCCUg---AGAUC--UGGAGGuCUGGG--------------CCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.