miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 5' -58.1 NC_006146.1 + 18982 0.68 0.778067
Target:  5'- aGGGCggCaGGGCCggagCCAGACCCcaguGGGGg -3'
miRNA:   3'- cCCUGa-GaUCUGGa---GGUCUGGG----CCCU- -5'
29137 5' -58.1 NC_006146.1 + 19118 0.68 0.750527
Target:  5'- gGGGuaGCUCUGGGagucagagagUCggcCUAGGCCCGGGGa -3'
miRNA:   3'- -CCC--UGAGAUCU----------GGa--GGUCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 19893 0.66 0.868024
Target:  5'- cGGAg---GGACC-CCGGcaGCCCGGGAg -3'
miRNA:   3'- cCCUgagaUCUGGaGGUC--UGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 19971 0.69 0.693034
Target:  5'- gGGGGCgUCUgcgaggucaggAGGCC-CCAcGACgCCGGGAa -3'
miRNA:   3'- -CCCUG-AGA-----------UCUGGaGGU-CUG-GGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 20276 0.68 0.759816
Target:  5'- gGGGACUUUAgguGACCcUCGGGCCUGGc- -3'
miRNA:   3'- -CCCUGAGAU---CUGGaGGUCUGGGCCcu -5'
29137 5' -58.1 NC_006146.1 + 20602 0.68 0.759816
Target:  5'- aGGACUacgAGuCCUUCAGGCucaCCGGGGg -3'
miRNA:   3'- cCCUGAga-UCuGGAGGUCUG---GGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 21009 0.71 0.623894
Target:  5'- aGGGgucuucuaccucACUCUAGcCCUCCAGGCCCu--- -3'
miRNA:   3'- -CCC------------UGAGAUCuGGAGGUCUGGGcccu -5'
29137 5' -58.1 NC_006146.1 + 21158 0.7 0.654628
Target:  5'- aGGGAgaCccaagcgaagccaccGGACCUuCCAGGCCCGGGc -3'
miRNA:   3'- -CCCUgaGa--------------UCUGGA-GGUCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 22196 0.68 0.750527
Target:  5'- gGGGuaGCUCUGGGagucagagagUCggcCUAGGCCCGGGGa -3'
miRNA:   3'- -CCC--UGAGAUCU----------GGa--GGUCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 22970 0.66 0.868024
Target:  5'- cGGAg---GGACC-CCGGcaGCCCGGGAg -3'
miRNA:   3'- cCCUgagaUCUGGaGGUC--UGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 23354 0.68 0.759816
Target:  5'- gGGGACUUUAgguGACCcUCGGGCCUGGc- -3'
miRNA:   3'- -CCCUGAGAU---CUGGaGGUCUGGGCCcu -5'
29137 5' -58.1 NC_006146.1 + 24074 0.66 0.845533
Target:  5'- cGGGCUCUAcgcuggcgcGGCCUC---GCCUGGGAc -3'
miRNA:   3'- cCCUGAGAU---------CUGGAGgucUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 24087 0.71 0.623894
Target:  5'- aGGGgucuucuaccucACUCUAGcCCUCCAGGCCCu--- -3'
miRNA:   3'- -CCC------------UGAGAUCuGGAGGUCUGGGcccu -5'
29137 5' -58.1 NC_006146.1 + 24225 0.67 0.795827
Target:  5'- uGGGGC-CgGGGCCgcCCAccGCCCGGGAg -3'
miRNA:   3'- -CCCUGaGaUCUGGa-GGUc-UGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 24236 0.7 0.654628
Target:  5'- aGGGAgaCccaagcgaagccaccGGACCUuCCAGGCCCGGGc -3'
miRNA:   3'- -CCCUgaGa--------------UCUGGA-GGUCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 24270 0.67 0.795827
Target:  5'- uGGAC-CcAGGCCUCguGACCCuggccGGGGg -3'
miRNA:   3'- cCCUGaGaUCUGGAGguCUGGG-----CCCU- -5'
29137 5' -58.1 NC_006146.1 + 25274 0.68 0.750527
Target:  5'- gGGGuaGCUCUGGGagucagagagUCggcCUAGGCCCGGGGa -3'
miRNA:   3'- -CCC--UGAGAUCU----------GGa--GGUCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 26048 0.66 0.868024
Target:  5'- cGGAg---GGACC-CCGGcaGCCCGGGAg -3'
miRNA:   3'- cCCUgagaUCUGGaGGUC--UGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 26432 0.68 0.759816
Target:  5'- gGGGACUUUAgguGACCcUCGGGCCUGGc- -3'
miRNA:   3'- -CCCUGAGAU---CUGGaGGUCUGGGCCcu -5'
29137 5' -58.1 NC_006146.1 + 27165 0.71 0.623894
Target:  5'- aGGGgucuucuaccucACUCUAGcCCUCCAGGCCCu--- -3'
miRNA:   3'- -CCC------------UGAGAUCuGGAGGUCUGGGcccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.