miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 5' -58.1 NC_006146.1 + 156820 1.11 0.001876
Target:  5'- gGGGACUCUAGACCUCCAGACCCGGGAg -3'
miRNA:   3'- -CCCUGAGAUCUGGAGGUCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 39056 0.69 0.731664
Target:  5'- aGGGGCcCUGugaauggucgccGGCCUCCGGuCUgGGGAa -3'
miRNA:   3'- -CCCUGaGAU------------CUGGAGGUCuGGgCCCU- -5'
29137 5' -58.1 NC_006146.1 + 41610 0.69 0.722107
Target:  5'- cGGGGggCUGGuCCgCUGGGCCCGGGc -3'
miRNA:   3'- -CCCUgaGAUCuGGaGGUCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 27314 0.7 0.654628
Target:  5'- aGGGAgaCccaagcgaagccaccGGACCUuCCAGGCCCGGGc -3'
miRNA:   3'- -CCCUgaGa--------------UCUGGA-GGUCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 21009 0.71 0.623894
Target:  5'- aGGGgucuucuaccucACUCUAGcCCUCCAGGCCCu--- -3'
miRNA:   3'- -CCC------------UGAGAUCuGGAGGUCUGGGcccu -5'
29137 5' -58.1 NC_006146.1 + 22196 0.68 0.750527
Target:  5'- gGGGuaGCUCUGGGagucagagagUCggcCUAGGCCCGGGGa -3'
miRNA:   3'- -CCC--UGAGAUCU----------GGa--GGUCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 92565 0.69 0.731664
Target:  5'- gGGGuCUC-AGACCUCuCAGucaACCCaGGAu -3'
miRNA:   3'- -CCCuGAGaUCUGGAG-GUC---UGGGcCCU- -5'
29137 5' -58.1 NC_006146.1 + 158271 0.72 0.555003
Target:  5'- gGGGACUCUGGc---CCAGcCCCGGGu -3'
miRNA:   3'- -CCCUGAGAUCuggaGGUCuGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 69602 0.7 0.683237
Target:  5'- uGGGGCagcgAGACgUCCAGGCCCacguccccGGGGu -3'
miRNA:   3'- -CCCUGaga-UCUGgAGGUCUGGG--------CCCU- -5'
29137 5' -58.1 NC_006146.1 + 45955 0.7 0.6734
Target:  5'- gGGGAC-CUcGACgCUCUcuGCCCGGGGc -3'
miRNA:   3'- -CCCUGaGAuCUG-GAGGucUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 113675 0.73 0.475646
Target:  5'- aGGuGGCUCgggcccgggcccGGCCUCCGG-CCCGGGGa -3'
miRNA:   3'- -CC-CUGAGau----------CUGGAGGUCuGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 65183 0.73 0.470185
Target:  5'- uGGGGCUCUuggagcccuAGGCgCUCUggGGGCCCuGGGAg -3'
miRNA:   3'- -CCCUGAGA---------UCUG-GAGG--UCUGGG-CCCU- -5'
29137 5' -58.1 NC_006146.1 + 167176 0.68 0.750527
Target:  5'- cGGGACgggAGGCCggcgcgcgcCCGGGguCCCGGGGg -3'
miRNA:   3'- -CCCUGagaUCUGGa--------GGUCU--GGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 25274 0.68 0.750527
Target:  5'- gGGGuaGCUCUGGGagucagagagUCggcCUAGGCCCGGGGa -3'
miRNA:   3'- -CCC--UGAGAUCU----------GGa--GGUCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 150000 0.69 0.702784
Target:  5'- cGGACUCaGGGCCUCCAcgaaggccuuGGCCCGc-- -3'
miRNA:   3'- cCCUGAGaUCUGGAGGU----------CUGGGCccu -5'
29137 5' -58.1 NC_006146.1 + 41424 0.7 0.633813
Target:  5'- gGGGGCacccgaguuuUCUAGGCUcCUAGAUCUGGGGc -3'
miRNA:   3'- -CCCUG----------AGAUCUGGaGGUCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 24087 0.71 0.623894
Target:  5'- aGGGgucuucuaccucACUCUAGcCCUCCAGGCCCu--- -3'
miRNA:   3'- -CCC------------UGAGAUCuGGAGGUCUGGGcccu -5'
29137 5' -58.1 NC_006146.1 + 3726 0.74 0.461156
Target:  5'- aGGGuCUCUGGGggccgcguggcCCUUCAG-CCCGGGGu -3'
miRNA:   3'- -CCCuGAGAUCU-----------GGAGGUCuGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 83645 0.7 0.672414
Target:  5'- gGGGGCUCUgcgggccAGACCUCCAccUuuGGGu -3'
miRNA:   3'- -CCCUGAGA-------UCUGGAGGUcuGggCCCu -5'
29137 5' -58.1 NC_006146.1 + 141838 0.69 0.693034
Target:  5'- uGGGcCUCUAG-UCUCaCAGAgUCGGGGg -3'
miRNA:   3'- -CCCuGAGAUCuGGAG-GUCUgGGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.