Results 1 - 20 of 58 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 92319 | 0.66 | 0.609205 |
Target: 5'- cUGCUGggGGGcGGGCCcGGCcuggGGCAg- -3' miRNA: 3'- uAUGGCa-CCC-CCCGGuCCGa---CCGUaa -5' |
|||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 169357 | 0.66 | 0.599224 |
Target: 5'- uGUGCC-UGgcgggggagaGGGGGCaGGGCUGGCGc- -3' miRNA: 3'- -UAUGGcAC----------CCCCCGgUCCGACCGUaa -5' |
|||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 170288 | 0.66 | 0.599224 |
Target: 5'- uGUGCC-UGgcgggggagaGGGGGCaGGGCUGGCGc- -3' miRNA: 3'- -UAUGGcAC----------CCCCCGgUCCGACCGUaa -5' |
|||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 167493 | 0.66 | 0.599224 |
Target: 5'- uGUGCC-UGgcgggggagaGGGGGCaGGGCUGGCGc- -3' miRNA: 3'- -UAUGGcAC----------CCCCCGgUCCGACCGUaa -5' |
|||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 168425 | 0.66 | 0.599224 |
Target: 5'- uGUGCC-UGgcgggggagaGGGGGCaGGGCUGGCGc- -3' miRNA: 3'- -UAUGGcAC----------CCCCCGgUCCGACCGUaa -5' |
|||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 67586 | 0.66 | 0.579338 |
Target: 5'- uUACUuUGGGGGGCCcguGGCguuUGGCc-- -3' miRNA: 3'- uAUGGcACCCCCCGGu--CCG---ACCGuaa -5' |
|||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 48332 | 0.66 | 0.569447 |
Target: 5'- -gGCgGUGGuGGGCCAGGCguccagucUGGCc-- -3' miRNA: 3'- uaUGgCACCcCCCGGUCCG--------ACCGuaa -5' |
|||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 126173 | 0.66 | 0.559597 |
Target: 5'- -aGCCaucaaGGGGGGCCaguGGGCaGGCAc- -3' miRNA: 3'- uaUGGca---CCCCCCGG---UCCGaCCGUaa -5' |
|||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 98318 | 0.66 | 0.559597 |
Target: 5'- --uCCGUGGccgucuggcacGGGGCCGGGCgcGGCc-- -3' miRNA: 3'- uauGGCACC-----------CCCCGGUCCGa-CCGuaa -5' |
|||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 125618 | 0.66 | 0.559597 |
Target: 5'- -cACCGagGGuGGGGCaUGGGCUGGUg-- -3' miRNA: 3'- uaUGGCa-CC-CCCCG-GUCCGACCGuaa -5' |
|||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 42680 | 0.67 | 0.540048 |
Target: 5'- -cGCgGUGGGcuGCCugAGGCUGGCAg- -3' miRNA: 3'- uaUGgCACCCccCGG--UCCGACCGUaa -5' |
|||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 44392 | 0.67 | 0.530359 |
Target: 5'- -gGgCGUGuGGGGCCGGGCacGGCGc- -3' miRNA: 3'- uaUgGCACcCCCCGGUCCGa-CCGUaa -5' |
|||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 39514 | 0.67 | 0.511179 |
Target: 5'- cUGCUGUGGGuGGCUgauGGGCUGGgGg- -3' miRNA: 3'- uAUGGCACCCcCCGG---UCCGACCgUaa -5' |
|||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 61393 | 0.67 | 0.501697 |
Target: 5'- -aGCUaUGGGGGuugucCCAGGCUGGCu-- -3' miRNA: 3'- uaUGGcACCCCCc----GGUCCGACCGuaa -5' |
|||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 95734 | 0.68 | 0.492293 |
Target: 5'- aAUGCCcaGUGGGGGG---GGCUGGUGUUg -3' miRNA: 3'- -UAUGG--CACCCCCCgguCCGACCGUAA- -5' |
|||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 33214 | 0.68 | 0.492293 |
Target: 5'- -gGCCGgaGGGGGaGCCgggaugGGGCUGGgGUUc -3' miRNA: 3'- uaUGGCa-CCCCC-CGG------UCCGACCgUAA- -5' |
|||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 168327 | 0.68 | 0.492293 |
Target: 5'- --cCCGagGGcGGGGCCGGGgcCUGGCGg- -3' miRNA: 3'- uauGGCa-CC-CCCCGGUCC--GACCGUaa -5' |
|||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 167395 | 0.68 | 0.492293 |
Target: 5'- --cCCGagGGcGGGGCCGGGgcCUGGCGg- -3' miRNA: 3'- uauGGCa-CC-CCCCGGUCC--GACCGUaa -5' |
|||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 153419 | 0.68 | 0.492293 |
Target: 5'- --cCCGgGGGcGGGUguGGCUGGCu-- -3' miRNA: 3'- uauGGCaCCC-CCCGguCCGACCGuaa -5' |
|||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 170190 | 0.68 | 0.492293 |
Target: 5'- --cCCGagGGcGGGGCCGGGgcCUGGCGg- -3' miRNA: 3'- uauGGCa-CC-CCCCGGUCC--GACCGUaa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home