miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29142 3' -62.3 NC_006146.1 + 92319 0.66 0.609205
Target:  5'- cUGCUGggGGGcGGGCCcGGCcuggGGCAg- -3'
miRNA:   3'- uAUGGCa-CCC-CCCGGuCCGa---CCGUaa -5'
29142 3' -62.3 NC_006146.1 + 170288 0.66 0.599224
Target:  5'- uGUGCC-UGgcgggggagaGGGGGCaGGGCUGGCGc- -3'
miRNA:   3'- -UAUGGcAC----------CCCCCGgUCCGACCGUaa -5'
29142 3' -62.3 NC_006146.1 + 168425 0.66 0.599224
Target:  5'- uGUGCC-UGgcgggggagaGGGGGCaGGGCUGGCGc- -3'
miRNA:   3'- -UAUGGcAC----------CCCCCGgUCCGACCGUaa -5'
29142 3' -62.3 NC_006146.1 + 169357 0.66 0.599224
Target:  5'- uGUGCC-UGgcgggggagaGGGGGCaGGGCUGGCGc- -3'
miRNA:   3'- -UAUGGcAC----------CCCCCGgUCCGACCGUaa -5'
29142 3' -62.3 NC_006146.1 + 167493 0.66 0.599224
Target:  5'- uGUGCC-UGgcgggggagaGGGGGCaGGGCUGGCGc- -3'
miRNA:   3'- -UAUGGcAC----------CCCCCGgUCCGACCGUaa -5'
29142 3' -62.3 NC_006146.1 + 67586 0.66 0.579338
Target:  5'- uUACUuUGGGGGGCCcguGGCguuUGGCc-- -3'
miRNA:   3'- uAUGGcACCCCCCGGu--CCG---ACCGuaa -5'
29142 3' -62.3 NC_006146.1 + 48332 0.66 0.569447
Target:  5'- -gGCgGUGGuGGGCCAGGCguccagucUGGCc-- -3'
miRNA:   3'- uaUGgCACCcCCCGGUCCG--------ACCGuaa -5'
29142 3' -62.3 NC_006146.1 + 126173 0.66 0.559597
Target:  5'- -aGCCaucaaGGGGGGCCaguGGGCaGGCAc- -3'
miRNA:   3'- uaUGGca---CCCCCCGG---UCCGaCCGUaa -5'
29142 3' -62.3 NC_006146.1 + 98318 0.66 0.559597
Target:  5'- --uCCGUGGccgucuggcacGGGGCCGGGCgcGGCc-- -3'
miRNA:   3'- uauGGCACC-----------CCCCGGUCCGa-CCGuaa -5'
29142 3' -62.3 NC_006146.1 + 125618 0.66 0.559597
Target:  5'- -cACCGagGGuGGGGCaUGGGCUGGUg-- -3'
miRNA:   3'- uaUGGCa-CC-CCCCG-GUCCGACCGuaa -5'
29142 3' -62.3 NC_006146.1 + 42680 0.67 0.540048
Target:  5'- -cGCgGUGGGcuGCCugAGGCUGGCAg- -3'
miRNA:   3'- uaUGgCACCCccCGG--UCCGACCGUaa -5'
29142 3' -62.3 NC_006146.1 + 44392 0.67 0.530359
Target:  5'- -gGgCGUGuGGGGCCGGGCacGGCGc- -3'
miRNA:   3'- uaUgGCACcCCCCGGUCCGa-CCGUaa -5'
29142 3' -62.3 NC_006146.1 + 39514 0.67 0.511179
Target:  5'- cUGCUGUGGGuGGCUgauGGGCUGGgGg- -3'
miRNA:   3'- uAUGGCACCCcCCGG---UCCGACCgUaa -5'
29142 3' -62.3 NC_006146.1 + 61393 0.67 0.501697
Target:  5'- -aGCUaUGGGGGuugucCCAGGCUGGCu-- -3'
miRNA:   3'- uaUGGcACCCCCc----GGUCCGACCGuaa -5'
29142 3' -62.3 NC_006146.1 + 4663 0.68 0.492293
Target:  5'- -cGCCGUccugggccGGGuGGGCgAGGCgggGGCAg- -3'
miRNA:   3'- uaUGGCA--------CCC-CCCGgUCCGa--CCGUaa -5'
29142 3' -62.3 NC_006146.1 + 169259 0.68 0.492293
Target:  5'- --cCCGagGGcGGGGCCGGGgcCUGGCGg- -3'
miRNA:   3'- uauGGCa-CC-CCCCGGUCC--GACCGUaa -5'
29142 3' -62.3 NC_006146.1 + 33214 0.68 0.492293
Target:  5'- -gGCCGgaGGGGGaGCCgggaugGGGCUGGgGUUc -3'
miRNA:   3'- uaUGGCa-CCCCC-CGG------UCCGACCgUAA- -5'
29142 3' -62.3 NC_006146.1 + 167395 0.68 0.492293
Target:  5'- --cCCGagGGcGGGGCCGGGgcCUGGCGg- -3'
miRNA:   3'- uauGGCa-CC-CCCCGGUCC--GACCGUaa -5'
29142 3' -62.3 NC_006146.1 + 168327 0.68 0.492293
Target:  5'- --cCCGagGGcGGGGCCGGGgcCUGGCGg- -3'
miRNA:   3'- uauGGCa-CC-CCCCGGUCC--GACCGUaa -5'
29142 3' -62.3 NC_006146.1 + 170190 0.68 0.492293
Target:  5'- --cCCGagGGcGGGGCCGGGgcCUGGCGg- -3'
miRNA:   3'- uauGGCa-CC-CCCCGGUCC--GACCGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.