miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29142 3' -62.3 NC_006146.1 + 159231 1.04 0.001527
Target:  5'- gAUACCGUGGGGGGCCAGGCUGGCAUUa -3'
miRNA:   3'- -UAUGGCACCCCCCGGUCCGACCGUAA- -5'
29142 3' -62.3 NC_006146.1 + 169259 0.68 0.492293
Target:  5'- --cCCGagGGcGGGGCCGGGgcCUGGCGg- -3'
miRNA:   3'- uauGGCa-CC-CCCCGGUCC--GACCGUaa -5'
29142 3' -62.3 NC_006146.1 + 61393 0.67 0.501697
Target:  5'- -aGCUaUGGGGGuugucCCAGGCUGGCu-- -3'
miRNA:   3'- uaUGGcACCCCCc----GGUCCGACCGuaa -5'
29142 3' -62.3 NC_006146.1 + 170288 0.66 0.599224
Target:  5'- uGUGCC-UGgcgggggagaGGGGGCaGGGCUGGCGc- -3'
miRNA:   3'- -UAUGGcAC----------CCCCCGgUCCGACCGUaa -5'
29142 3' -62.3 NC_006146.1 + 170232 0.74 0.189736
Target:  5'- --cCCGgggcGGGGGGUCGGGCgGGCAUg -3'
miRNA:   3'- uauGGCa---CCCCCCGGUCCGaCCGUAa -5'
29142 3' -62.3 NC_006146.1 + 170108 0.73 0.224723
Target:  5'- -cGCCGcagGGGGGGCC-GGCggGGCGUc -3'
miRNA:   3'- uaUGGCa--CCCCCCGGuCCGa-CCGUAa -5'
29142 3' -62.3 NC_006146.1 + 167306 0.7 0.339908
Target:  5'- -gGCCGgcgccugcagGGGGGGCC-GGCggGGCGUc -3'
miRNA:   3'- uaUGGCa---------CCCCCCGGuCCGa-CCGUAa -5'
29142 3' -62.3 NC_006146.1 + 168238 0.7 0.339908
Target:  5'- -gGCCGgcgccugcagGGGGGGCC-GGCggGGCGUc -3'
miRNA:   3'- uaUGGCa---------CCCCCCGGuCCGa-CCGUAa -5'
29142 3' -62.3 NC_006146.1 + 44755 0.68 0.455535
Target:  5'- -gGCUGUGGuugucGGGGCCcGGCgGGCGg- -3'
miRNA:   3'- uaUGGCACC-----CCCCGGuCCGaCCGUaa -5'
29142 3' -62.3 NC_006146.1 + 168327 0.68 0.492293
Target:  5'- --cCCGagGGcGGGGCCGGGgcCUGGCGg- -3'
miRNA:   3'- uauGGCa-CC-CCCCGGUCC--GACCGUaa -5'
29142 3' -62.3 NC_006146.1 + 4663 0.68 0.492293
Target:  5'- -cGCCGUccugggccGGGuGGGCgAGGCgggGGCAg- -3'
miRNA:   3'- uaUGGCA--------CCC-CCCGgUCCGa--CCGUaa -5'
29142 3' -62.3 NC_006146.1 + 93899 0.69 0.394997
Target:  5'- uUugCGgcagGGGGGGCCAGcacGgaGGCGUa -3'
miRNA:   3'- uAugGCa---CCCCCCGGUC---CgaCCGUAa -5'
29142 3' -62.3 NC_006146.1 + 167437 0.74 0.189736
Target:  5'- --cCCGgggcGGGGGGUCGGGCgGGCAUg -3'
miRNA:   3'- uauGGCa---CCCCCCGGUCCGaCCGUAa -5'
29142 3' -62.3 NC_006146.1 + 153419 0.68 0.492293
Target:  5'- --cCCGgGGGcGGGUguGGCUGGCu-- -3'
miRNA:   3'- uauGGCaCCC-CCCGguCCGACCGuaa -5'
29142 3' -62.3 NC_006146.1 + 168369 0.74 0.189736
Target:  5'- --cCCGgggcGGGGGGUCGGGCgGGCAUg -3'
miRNA:   3'- uauGGCa---CCCCCCGGUCCGaCCGUAa -5'
29142 3' -62.3 NC_006146.1 + 169170 0.7 0.339908
Target:  5'- -gGCCGgcgccugcagGGGGGGCC-GGCggGGCGUc -3'
miRNA:   3'- uaUGGCa---------CCCCCCGGuCCGa-CCGUAa -5'
29142 3' -62.3 NC_006146.1 + 167395 0.68 0.492293
Target:  5'- --cCCGagGGcGGGGCCGGGgcCUGGCGg- -3'
miRNA:   3'- uauGGCa-CC-CCCCGGUCC--GACCGUaa -5'
29142 3' -62.3 NC_006146.1 + 170190 0.68 0.492293
Target:  5'- --cCCGagGGcGGGGCCGGGgcCUGGCGg- -3'
miRNA:   3'- uauGGCa-CC-CCCCGGUCC--GACCGUaa -5'
29142 3' -62.3 NC_006146.1 + 169301 0.74 0.189736
Target:  5'- --cCCGgggcGGGGGGUCGGGCgGGCAUg -3'
miRNA:   3'- uauGGCa---CCCCCCGGUCCGaCCGUAa -5'
29142 3' -62.3 NC_006146.1 + 48627 0.72 0.277587
Target:  5'- gGUGCCGUGGGGGcgggcuCCGGGCgGGUg-- -3'
miRNA:   3'- -UAUGGCACCCCCc-----GGUCCGaCCGuaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.