miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29143 3' -59.4 NC_006146.1 + 159370 1.11 0.001193
Target:  5'- gGGGCGUAGCUGACCGCCAGCUCGCAGg -3'
miRNA:   3'- -CCCGCAUCGACUGGCGGUCGAGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 43634 0.78 0.195508
Target:  5'- uGGGCGgcggGGCgUGGCCGCCuggggagaggggcccGGCUCGCAu -3'
miRNA:   3'- -CCCGCa---UCG-ACUGGCGG---------------UCGAGCGUc -5'
29143 3' -59.4 NC_006146.1 + 32152 0.75 0.323123
Target:  5'- aGGGcCGUGGCaGGCCGCuCAGCUCaGCc- -3'
miRNA:   3'- -CCC-GCAUCGaCUGGCG-GUCGAG-CGuc -5'
29143 3' -59.4 NC_006146.1 + 32568 0.74 0.330329
Target:  5'- aGGUG-GGCUGcauauucCCGCCAGCUUGCAGu -3'
miRNA:   3'- cCCGCaUCGACu------GGCGGUCGAGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 46778 0.74 0.337653
Target:  5'- cGGGCGgaUGGCUGGCCgGCCGGCgCGaGGg -3'
miRNA:   3'- -CCCGC--AUCGACUGG-CGGUCGaGCgUC- -5'
29143 3' -59.4 NC_006146.1 + 42782 0.73 0.37364
Target:  5'- aGGCGgcGCgUGGCCGCCucggccagguuggcGGuCUCGCAGa -3'
miRNA:   3'- cCCGCauCG-ACUGGCGG--------------UC-GAGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 99161 0.72 0.452113
Target:  5'- cGGCagGUGGCgGAggGCCAGCUCGUAGa -3'
miRNA:   3'- cCCG--CAUCGaCUggCGGUCGAGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 160133 0.71 0.503475
Target:  5'- uGGGCGgcggacuuuggcaGGCUGGCCuuuaagGCCAGCUgGCGu -3'
miRNA:   3'- -CCCGCa------------UCGACUGG------CGGUCGAgCGUc -5'
29143 3' -59.4 NC_006146.1 + 41080 0.71 0.507243
Target:  5'- gGGGCGUGGCgggugGGCCGCgGGCgauuuuuCAGa -3'
miRNA:   3'- -CCCGCAUCGa----CUGGCGgUCGagc----GUC- -5'
29143 3' -59.4 NC_006146.1 + 55992 0.7 0.545534
Target:  5'- cGGCGUAGacggUGACCaGCCAGCgUCcCAGa -3'
miRNA:   3'- cCCGCAUCg---ACUGG-CGGUCG-AGcGUC- -5'
29143 3' -59.4 NC_006146.1 + 53352 0.7 0.545534
Target:  5'- gGGGCGgcgugaggucuUGGCUGGCCcggcGCUuGCUCGCGu -3'
miRNA:   3'- -CCCGC-----------AUCGACUGG----CGGuCGAGCGUc -5'
29143 3' -59.4 NC_006146.1 + 160367 0.7 0.565033
Target:  5'- uGGCGUcucagcgcccuuGGCaGGCCGcCCAGuCUCGCAa -3'
miRNA:   3'- cCCGCA------------UCGaCUGGC-GGUC-GAGCGUc -5'
29143 3' -59.4 NC_006146.1 + 42740 0.7 0.574852
Target:  5'- cGGCGUcGCUGcAUCGCCuGCggcaGCAGg -3'
miRNA:   3'- cCCGCAuCGAC-UGGCGGuCGag--CGUC- -5'
29143 3' -59.4 NC_006146.1 + 146678 0.7 0.574852
Target:  5'- cGGGCGgugGGC-GGCC-CCGGCcccaacagaccUCGCAGg -3'
miRNA:   3'- -CCCGCa--UCGaCUGGcGGUCG-----------AGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 34035 0.7 0.574852
Target:  5'- cGGGCGUGGUcccggGGCCuauGCCGGC-CGgGGg -3'
miRNA:   3'- -CCCGCAUCGa----CUGG---CGGUCGaGCgUC- -5'
29143 3' -59.4 NC_006146.1 + 33606 0.7 0.584709
Target:  5'- uGGGCGUGGU---CCGCgGGUUCGguGc -3'
miRNA:   3'- -CCCGCAUCGacuGGCGgUCGAGCguC- -5'
29143 3' -59.4 NC_006146.1 + 38754 0.69 0.594598
Target:  5'- uGGCGUGGUUGAUgGCacauaggGGgUCGCAGa -3'
miRNA:   3'- cCCGCAUCGACUGgCGg------UCgAGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 40016 0.69 0.604514
Target:  5'- uGGGCGUAGCagggGGCCuGCUgggGGC-CGUAGc -3'
miRNA:   3'- -CCCGCAUCGa---CUGG-CGG---UCGaGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 45537 0.69 0.618426
Target:  5'- uGGGCcuccuugGGCuUGGCCGCCcuggccuccgcgaggAGCUCGCGc -3'
miRNA:   3'- -CCCGca-----UCG-ACUGGCGG---------------UCGAGCGUc -5'
29143 3' -59.4 NC_006146.1 + 112353 0.69 0.624396
Target:  5'- aGGGCuccauGUAggccgccacGCUGACCgGCC-GCUUGCAGa -3'
miRNA:   3'- -CCCG-----CAU---------CGACUGG-CGGuCGAGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.