Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 4149 | 0.68 | 0.693766 |
Target: 5'- uGGGCGUgaAGCUGACguaCGGCUCGg-- -3' miRNA: 3'- -CCCGCA--UCGACUGgcgGUCGAGCguc -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 11532 | 0.66 | 0.787985 |
Target: 5'- -uGCG-AGCUGGCgGUCAGCUaCGCc- -3' miRNA: 3'- ccCGCaUCGACUGgCGGUCGA-GCGuc -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 19141 | 0.66 | 0.787985 |
Target: 5'- aGGCGcaaGGCUGACgggGCCAGCgugUGCGu -3' miRNA: 3'- cCCGCa--UCGACUGg--CGGUCGa--GCGUc -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 23797 | 0.69 | 0.634349 |
Target: 5'- gGGGCcc-GCUGAgCC-CCAGCUCGCc- -3' miRNA: 3'- -CCCGcauCGACU-GGcGGUCGAGCGuc -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 32152 | 0.75 | 0.323123 |
Target: 5'- aGGGcCGUGGCaGGCCGCuCAGCUCaGCc- -3' miRNA: 3'- -CCC-GCAUCGaCUGGCG-GUCGAG-CGuc -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 32568 | 0.74 | 0.330329 |
Target: 5'- aGGUG-GGCUGcauauucCCGCCAGCUUGCAGu -3' miRNA: 3'- cCCGCaUCGACu------GGCGGUCGAGCGUC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 33103 | 0.68 | 0.664168 |
Target: 5'- gGGGCagccGGgUGGCCGCCGGCggguUCGcCGGg -3' miRNA: 3'- -CCCGca--UCgACUGGCGGUCG----AGC-GUC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 33227 | 0.67 | 0.751421 |
Target: 5'- gGGGCagccGGgUGGCCGCCGGCgggucCGcCGGg -3' miRNA: 3'- -CCCGca--UCgACUGGCGGUCGa----GC-GUC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 33606 | 0.7 | 0.584709 |
Target: 5'- uGGGCGUGGU---CCGCgGGUUCGguGc -3' miRNA: 3'- -CCCGCAUCGacuGGCGgUCGAGCguC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 33784 | 0.67 | 0.751421 |
Target: 5'- uGGGCGUGGUccgaUGGguCCGCgGGUUUGguGc -3' miRNA: 3'- -CCCGCAUCG----ACU--GGCGgUCGAGCguC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 33970 | 0.66 | 0.779023 |
Target: 5'- uGGGCGUGguccGCUGGguCCGCUGGUcCGguGc -3' miRNA: 3'- -CCCGCAU----CGACU--GGCGGUCGaGCguC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 34035 | 0.7 | 0.574852 |
Target: 5'- cGGGCGUGGUcccggGGCCuauGCCGGC-CGgGGg -3' miRNA: 3'- -CCCGCAUCGa----CUGG---CGGUCGaGCgUC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 38754 | 0.69 | 0.594598 |
Target: 5'- uGGCGUGGUUGAUgGCacauaggGGgUCGCAGa -3' miRNA: 3'- cCCGCAUCGACUGgCGg------UCgAGCGUC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 40016 | 0.69 | 0.604514 |
Target: 5'- uGGGCGUAGCagggGGCCuGCUgggGGC-CGUAGc -3' miRNA: 3'- -CCCGCAUCGa---CUGG-CGG---UCGaGCGUC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 41080 | 0.71 | 0.507243 |
Target: 5'- gGGGCGUGGCgggugGGCCGCgGGCgauuuuuCAGa -3' miRNA: 3'- -CCCGCAUCGa----CUGGCGgUCGagc----GUC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 41144 | 0.66 | 0.769935 |
Target: 5'- gGGGCGUGcGCUGACUcUguGCaauaUCGCAa -3' miRNA: 3'- -CCCGCAU-CGACUGGcGguCG----AGCGUc -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 42426 | 0.67 | 0.750484 |
Target: 5'- aGGCGagacgcAGCUGggugcgcGCCGCCAGCaUgGCGGc -3' miRNA: 3'- cCCGCa-----UCGAC-------UGGCGGUCG-AgCGUC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 42740 | 0.7 | 0.574852 |
Target: 5'- cGGCGUcGCUGcAUCGCCuGCggcaGCAGg -3' miRNA: 3'- cCCGCAuCGAC-UGGCGGuCGag--CGUC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 42782 | 0.73 | 0.37364 |
Target: 5'- aGGCGgcGCgUGGCCGCCucggccagguuggcGGuCUCGCAGa -3' miRNA: 3'- cCCGCauCG-ACUGGCGG--------------UC-GAGCGUC- -5' |
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29143 | 3' | -59.4 | NC_006146.1 | + | 43634 | 0.78 | 0.195508 |
Target: 5'- uGGGCGgcggGGCgUGGCCGCCuggggagaggggcccGGCUCGCAu -3' miRNA: 3'- -CCCGCa---UCG-ACUGGCGG---------------UCGAGCGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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