miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29143 3' -59.4 NC_006146.1 + 45537 0.69 0.618426
Target:  5'- uGGGCcuccuugGGCuUGGCCGCCcuggccuccgcgaggAGCUCGCGc -3'
miRNA:   3'- -CCCGca-----UCG-ACUGGCGG---------------UCGAGCGUc -5'
29143 3' -59.4 NC_006146.1 + 46778 0.74 0.337653
Target:  5'- cGGGCGgaUGGCUGGCCgGCCGGCgCGaGGg -3'
miRNA:   3'- -CCCGC--AUCGACUGG-CGGUCGaGCgUC- -5'
29143 3' -59.4 NC_006146.1 + 49037 0.67 0.722926
Target:  5'- gGGGCGcGGCccgaGACCGUC-GCgUCGUAGa -3'
miRNA:   3'- -CCCGCaUCGa---CUGGCGGuCG-AGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 50422 0.67 0.751421
Target:  5'- aGGGaCGgcaGGCaGGCCGCaAGCUuCGCGGc -3'
miRNA:   3'- -CCC-GCa--UCGaCUGGCGgUCGA-GCGUC- -5'
29143 3' -59.4 NC_006146.1 + 51691 0.66 0.796815
Target:  5'- gGGGCGggGGCUGAUCGuCCuccGUgUCGguGg -3'
miRNA:   3'- -CCCGCa-UCGACUGGC-GGu--CG-AGCguC- -5'
29143 3' -59.4 NC_006146.1 + 53352 0.7 0.545534
Target:  5'- gGGGCGgcgugaggucuUGGCUGGCCcggcGCUuGCUCGCGu -3'
miRNA:   3'- -CCCGC-----------AUCGACUGG----CGGuCGAGCGUc -5'
29143 3' -59.4 NC_006146.1 + 54883 0.66 0.769935
Target:  5'- cGGGCGUAGCgGG--GUCcGCUCGCGc -3'
miRNA:   3'- -CCCGCAUCGaCUggCGGuCGAGCGUc -5'
29143 3' -59.4 NC_006146.1 + 55266 0.68 0.683938
Target:  5'- cGGGCGaAGC-GGCuCGUgGgGCUCGCGGu -3'
miRNA:   3'- -CCCGCaUCGaCUG-GCGgU-CGAGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 55483 0.69 0.6443
Target:  5'- cGGGCGagaacgaGGCccGGCCGCCAGCUgccuccugcaCGCGa -3'
miRNA:   3'- -CCCGCa------UCGa-CUGGCGGUCGA----------GCGUc -5'
29143 3' -59.4 NC_006146.1 + 55992 0.7 0.545534
Target:  5'- cGGCGUAGacggUGACCaGCCAGCgUCcCAGa -3'
miRNA:   3'- cCCGCAUCg---ACUGG-CGGUCG-AGcGUC- -5'
29143 3' -59.4 NC_006146.1 + 56367 0.66 0.795939
Target:  5'- aGGCGUGGUggcgGagcaccGCCGCCGgguaagcguggccGCUCGCGa -3'
miRNA:   3'- cCCGCAUCGa---C------UGGCGGU-------------CGAGCGUc -5'
29143 3' -59.4 NC_006146.1 + 56591 0.68 0.693766
Target:  5'- cGGGCGccgAGCccGCCGCCGGUcuccUCGCc- -3'
miRNA:   3'- -CCCGCa--UCGacUGGCGGUCG----AGCGuc -5'
29143 3' -59.4 NC_006146.1 + 56856 0.66 0.773585
Target:  5'- gGGGCGgcagcuuuggcuggGGCUGGCgGCCcccguGUUCGgGGa -3'
miRNA:   3'- -CCCGCa-------------UCGACUGgCGGu----CGAGCgUC- -5'
29143 3' -59.4 NC_006146.1 + 57144 0.66 0.769935
Target:  5'- gGGGCugGUGGCcGACCGCC-GCUuccaCGCc- -3'
miRNA:   3'- -CCCG--CAUCGaCUGGCGGuCGA----GCGuc -5'
29143 3' -59.4 NC_006146.1 + 59311 0.69 0.6443
Target:  5'- cGGUGaccUGGCUGGCCGagaGGCUgGCGGu -3'
miRNA:   3'- cCCGC---AUCGACUGGCgg-UCGAgCGUC- -5'
29143 3' -59.4 NC_006146.1 + 62382 0.66 0.796815
Target:  5'- aGGCcc--CUGGCCGuUCAGCUCGCGa -3'
miRNA:   3'- cCCGcaucGACUGGC-GGUCGAGCGUc -5'
29143 3' -59.4 NC_006146.1 + 64252 0.66 0.779023
Target:  5'- aGGaCGgccCUGACCaGCCGGC-CGCAGc -3'
miRNA:   3'- cCC-GCaucGACUGG-CGGUCGaGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 65022 0.66 0.769935
Target:  5'- aGGgGgcGCUGGCCGCUAuCUUGCc- -3'
miRNA:   3'- cCCgCauCGACUGGCGGUcGAGCGuc -5'
29143 3' -59.4 NC_006146.1 + 92342 0.67 0.732509
Target:  5'- gGGGC--AGCUGAUauggGgCGGCUCGCAu -3'
miRNA:   3'- -CCCGcaUCGACUGg---CgGUCGAGCGUc -5'
29143 3' -59.4 NC_006146.1 + 99161 0.72 0.452113
Target:  5'- cGGCagGUGGCgGAggGCCAGCUCGUAGa -3'
miRNA:   3'- cCCG--CAUCGaCUggCGGUCGAGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.