miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29143 3' -59.4 NC_006146.1 + 33784 0.67 0.751421
Target:  5'- uGGGCGUGGUccgaUGGguCCGCgGGUUUGguGc -3'
miRNA:   3'- -CCCGCAUCG----ACU--GGCGgUCGAGCguC- -5'
29143 3' -59.4 NC_006146.1 + 33227 0.67 0.751421
Target:  5'- gGGGCagccGGgUGGCCGCCGGCgggucCGcCGGg -3'
miRNA:   3'- -CCCGca--UCgACUGGCGGUCGa----GC-GUC- -5'
29143 3' -59.4 NC_006146.1 + 167802 0.67 0.722926
Target:  5'- uGGGCGUGGCgGGCgCGCgUGGCcCGCc- -3'
miRNA:   3'- -CCCGCAUCGaCUG-GCG-GUCGaGCGuc -5'
29143 3' -59.4 NC_006146.1 + 56591 0.68 0.693766
Target:  5'- cGGGCGccgAGCccGCCGCCGGUcuccUCGCc- -3'
miRNA:   3'- -CCCGCa--UCGacUGGCGGUCG----AGCGuc -5'
29143 3' -59.4 NC_006146.1 + 56856 0.66 0.773585
Target:  5'- gGGGCGgcagcuuuggcuggGGCUGGCgGCCcccguGUUCGgGGa -3'
miRNA:   3'- -CCCGCa-------------UCGACUGgCGGu----CGAGCgUC- -5'
29143 3' -59.4 NC_006146.1 + 54883 0.66 0.769935
Target:  5'- cGGGCGUAGCgGG--GUCcGCUCGCGc -3'
miRNA:   3'- -CCCGCAUCGaCUggCGGuCGAGCGUc -5'
29143 3' -59.4 NC_006146.1 + 49037 0.67 0.722926
Target:  5'- gGGGCGcGGCccgaGACCGUC-GCgUCGUAGa -3'
miRNA:   3'- -CCCGCaUCGa---CUGGCGGuCG-AGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 4149 0.68 0.693766
Target:  5'- uGGGCGUgaAGCUGACguaCGGCUCGg-- -3'
miRNA:   3'- -CCCGCA--UCGACUGgcgGUCGAGCguc -5'
29143 3' -59.4 NC_006146.1 + 65022 0.66 0.769935
Target:  5'- aGGgGgcGCUGGCCGCUAuCUUGCc- -3'
miRNA:   3'- cCCgCauCGACUGGCGGUcGAGCGuc -5'
29143 3' -59.4 NC_006146.1 + 123783 0.68 0.693766
Target:  5'- -uGCGUAGCUGGCUGCCgucauggugacGGCUCu--- -3'
miRNA:   3'- ccCGCAUCGACUGGCGG-----------UCGAGcguc -5'
29143 3' -59.4 NC_006146.1 + 50422 0.67 0.751421
Target:  5'- aGGGaCGgcaGGCaGGCCGCaAGCUuCGCGGc -3'
miRNA:   3'- -CCC-GCa--UCGaCUGGCGgUCGA-GCGUC- -5'
29143 3' -59.4 NC_006146.1 + 147104 0.67 0.751421
Target:  5'- uGGGCG-AGCUGgggcucagcggGCC-CCAGacgCGCAGg -3'
miRNA:   3'- -CCCGCaUCGAC-----------UGGcGGUCga-GCGUC- -5'
29143 3' -59.4 NC_006146.1 + 169666 0.67 0.722926
Target:  5'- uGGGCGUGGCgGGCgCGCgUGGCcCGCc- -3'
miRNA:   3'- -CCCGCAUCGaCUG-GCG-GUCGaGCGuc -5'
29143 3' -59.4 NC_006146.1 + 168734 0.67 0.722926
Target:  5'- uGGGCGUGGCgGGCgCGCgUGGCcCGCc- -3'
miRNA:   3'- -CCCGCAUCGaCUG-GCG-GUCGaGCGuc -5'
29143 3' -59.4 NC_006146.1 + 121497 0.67 0.722926
Target:  5'- gGGGC--AGCUGACgGUgGGCaugaCGCAGg -3'
miRNA:   3'- -CCCGcaUCGACUGgCGgUCGa---GCGUC- -5'
29143 3' -59.4 NC_006146.1 + 170486 0.68 0.697684
Target:  5'- gGGGCG-AGCggggggcuuccccgGACCcCCAGCgCGCGGc -3'
miRNA:   3'- -CCCGCaUCGa-------------CUGGcGGUCGaGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 147173 0.66 0.805505
Target:  5'- cGGCGgcGCaGACCGgcgccccuucgcCCGGUgCGCAGa -3'
miRNA:   3'- cCCGCauCGaCUGGC------------GGUCGaGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 33970 0.66 0.779023
Target:  5'- uGGGCGUGguccGCUGGguCCGCUGGUcCGguGc -3'
miRNA:   3'- -CCCGCAU----CGACU--GGCGGUCGaGCguC- -5'
29143 3' -59.4 NC_006146.1 + 102877 0.66 0.769935
Target:  5'- uGGuCGUGGCcgGGCC-CCAGUUUGCGc -3'
miRNA:   3'- cCC-GCAUCGa-CUGGcGGUCGAGCGUc -5'
29143 3' -59.4 NC_006146.1 + 57144 0.66 0.769935
Target:  5'- gGGGCugGUGGCcGACCGCC-GCUuccaCGCc- -3'
miRNA:   3'- -CCCG--CAUCGaCUGGCGGuCGA----GCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.