miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29143 3' -59.4 NC_006146.1 + 23797 0.69 0.634349
Target:  5'- gGGGCcc-GCUGAgCC-CCAGCUCGCc- -3'
miRNA:   3'- -CCCGcauCGACU-GGcGGUCGAGCGuc -5'
29143 3' -59.4 NC_006146.1 + 116805 0.69 0.634349
Target:  5'- aGGGCGUGGUggagGGCguccaggacgugUGCCGGgaCGCGGc -3'
miRNA:   3'- -CCCGCAUCGa---CUG------------GCGGUCgaGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 126720 0.69 0.6443
Target:  5'- aGGGCGcagaGGCUGgagggcACCGCCAGUUgUGCGa -3'
miRNA:   3'- -CCCGCa---UCGAC------UGGCGGUCGA-GCGUc -5'
29143 3' -59.4 NC_006146.1 + 55483 0.69 0.6443
Target:  5'- cGGGCGagaacgaGGCccGGCCGCCAGCUgccuccugcaCGCGa -3'
miRNA:   3'- -CCCGCa------UCGa-CUGGCGGUCGA----------GCGUc -5'
29143 3' -59.4 NC_006146.1 + 154898 0.69 0.6443
Target:  5'- aGGGCcucgcccgGGCUGACCGCguccGCccuUCGCAGg -3'
miRNA:   3'- -CCCGca------UCGACUGGCGgu--CG---AGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 59311 0.69 0.6443
Target:  5'- cGGUGaccUGGCUGGCCGagaGGCUgGCGGu -3'
miRNA:   3'- cCCGC---AUCGACUGGCgg-UCGAgCGUC- -5'
29143 3' -59.4 NC_006146.1 + 33103 0.68 0.664168
Target:  5'- gGGGCagccGGgUGGCCGCCGGCggguUCGcCGGg -3'
miRNA:   3'- -CCCGca--UCgACUGGCGGUCG----AGC-GUC- -5'
29143 3' -59.4 NC_006146.1 + 154649 0.68 0.674069
Target:  5'- uGGCGc-GCUG-CCGCCGGCU-GCAc -3'
miRNA:   3'- cCCGCauCGACuGGCGGUCGAgCGUc -5'
29143 3' -59.4 NC_006146.1 + 153427 0.68 0.674069
Target:  5'- cGGGUGUGGCUGGCUuuggagggGCCGGUgUUGUg- -3'
miRNA:   3'- -CCCGCAUCGACUGG--------CGGUCG-AGCGuc -5'
29143 3' -59.4 NC_006146.1 + 55266 0.68 0.683938
Target:  5'- cGGGCGaAGC-GGCuCGUgGgGCUCGCGGu -3'
miRNA:   3'- -CCCGCaUCGaCUG-GCGgU-CGAGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 165818 0.68 0.693766
Target:  5'- gGGGCGUccCUGGCCGCguGgaCGCc- -3'
miRNA:   3'- -CCCGCAucGACUGGCGguCgaGCGuc -5'
29143 3' -59.4 NC_006146.1 + 118302 0.68 0.693766
Target:  5'- uGGCccAGCUGACgGacgugcCCAGCUCGguGa -3'
miRNA:   3'- cCCGcaUCGACUGgC------GGUCGAGCguC- -5'
29143 3' -59.4 NC_006146.1 + 102915 0.68 0.693766
Target:  5'- uGGCGUGGCUgcgccccaaGAUCGUgGGCUgccugCGCAGc -3'
miRNA:   3'- cCCGCAUCGA---------CUGGCGgUCGA-----GCGUC- -5'
29143 3' -59.4 NC_006146.1 + 56591 0.68 0.693766
Target:  5'- cGGGCGccgAGCccGCCGCCGGUcuccUCGCc- -3'
miRNA:   3'- -CCCGCa--UCGacUGGCGGUCG----AGCGuc -5'
29143 3' -59.4 NC_006146.1 + 4149 0.68 0.693766
Target:  5'- uGGGCGUgaAGCUGACguaCGGCUCGg-- -3'
miRNA:   3'- -CCCGCA--UCGACUGgcgGUCGAGCguc -5'
29143 3' -59.4 NC_006146.1 + 123783 0.68 0.693766
Target:  5'- -uGCGUAGCUGGCUGCCgucauggugacGGCUCu--- -3'
miRNA:   3'- ccCGCAUCGACUGGCGG-----------UCGAGcguc -5'
29143 3' -59.4 NC_006146.1 + 170486 0.68 0.697684
Target:  5'- gGGGCG-AGCggggggcuuccccgGACCcCCAGCgCGCGGc -3'
miRNA:   3'- -CCCGCaUCGa-------------CUGGcGGUCGaGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 108728 0.68 0.703546
Target:  5'- uGGGCGU-GCUGGuguCCGCCucCUCGgAGu -3'
miRNA:   3'- -CCCGCAuCGACU---GGCGGucGAGCgUC- -5'
29143 3' -59.4 NC_006146.1 + 167802 0.67 0.722926
Target:  5'- uGGGCGUGGCgGGCgCGCgUGGCcCGCc- -3'
miRNA:   3'- -CCCGCAUCGaCUG-GCG-GUCGaGCGuc -5'
29143 3' -59.4 NC_006146.1 + 121497 0.67 0.722926
Target:  5'- gGGGC--AGCUGACgGUgGGCaugaCGCAGg -3'
miRNA:   3'- -CCCGcaUCGACUGgCGgUCGa---GCGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.