miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29143 3' -59.4 NC_006146.1 + 33227 0.67 0.751421
Target:  5'- gGGGCagccGGgUGGCCGCCGGCgggucCGcCGGg -3'
miRNA:   3'- -CCCGca--UCgACUGGCGGUCGa----GC-GUC- -5'
29143 3' -59.4 NC_006146.1 + 50422 0.67 0.751421
Target:  5'- aGGGaCGgcaGGCaGGCCGCaAGCUuCGCGGc -3'
miRNA:   3'- -CCC-GCa--UCGaCUGGCGgUCGA-GCGUC- -5'
29143 3' -59.4 NC_006146.1 + 42426 0.67 0.750484
Target:  5'- aGGCGagacgcAGCUGggugcgcGCCGCCAGCaUgGCGGc -3'
miRNA:   3'- cCCGCa-----UCGAC-------UGGCGGUCG-AgCGUC- -5'
29143 3' -59.4 NC_006146.1 + 102037 0.67 0.742011
Target:  5'- aGGGCcaGGCUG-UCGCCAGCcUGCu- -3'
miRNA:   3'- -CCCGcaUCGACuGGCGGUCGaGCGuc -5'
29143 3' -59.4 NC_006146.1 + 92342 0.67 0.732509
Target:  5'- gGGGC--AGCUGAUauggGgCGGCUCGCAu -3'
miRNA:   3'- -CCCGcaUCGACUGg---CgGUCGAGCGUc -5'
29143 3' -59.4 NC_006146.1 + 168734 0.67 0.722926
Target:  5'- uGGGCGUGGCgGGCgCGCgUGGCcCGCc- -3'
miRNA:   3'- -CCCGCAUCGaCUG-GCG-GUCGaGCGuc -5'
29143 3' -59.4 NC_006146.1 + 167802 0.67 0.722926
Target:  5'- uGGGCGUGGCgGGCgCGCgUGGCcCGCc- -3'
miRNA:   3'- -CCCGCAUCGaCUG-GCG-GUCGaGCGuc -5'
29143 3' -59.4 NC_006146.1 + 121497 0.67 0.722926
Target:  5'- gGGGC--AGCUGACgGUgGGCaugaCGCAGg -3'
miRNA:   3'- -CCCGcaUCGACUGgCGgUCGa---GCGUC- -5'
29143 3' -59.4 NC_006146.1 + 49037 0.67 0.722926
Target:  5'- gGGGCGcGGCccgaGACCGUC-GCgUCGUAGa -3'
miRNA:   3'- -CCCGCaUCGa---CUGGCGGuCG-AGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 169666 0.67 0.722926
Target:  5'- uGGGCGUGGCgGGCgCGCgUGGCcCGCc- -3'
miRNA:   3'- -CCCGCAUCGaCUG-GCG-GUCGaGCGuc -5'
29143 3' -59.4 NC_006146.1 + 108728 0.68 0.703546
Target:  5'- uGGGCGU-GCUGGuguCCGCCucCUCGgAGu -3'
miRNA:   3'- -CCCGCAuCGACU---GGCGGucGAGCgUC- -5'
29143 3' -59.4 NC_006146.1 + 170486 0.68 0.697684
Target:  5'- gGGGCG-AGCggggggcuuccccgGACCcCCAGCgCGCGGc -3'
miRNA:   3'- -CCCGCaUCGa-------------CUGGcGGUCGaGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 102915 0.68 0.693766
Target:  5'- uGGCGUGGCUgcgccccaaGAUCGUgGGCUgccugCGCAGc -3'
miRNA:   3'- cCCGCAUCGA---------CUGGCGgUCGA-----GCGUC- -5'
29143 3' -59.4 NC_006146.1 + 165818 0.68 0.693766
Target:  5'- gGGGCGUccCUGGCCGCguGgaCGCc- -3'
miRNA:   3'- -CCCGCAucGACUGGCGguCgaGCGuc -5'
29143 3' -59.4 NC_006146.1 + 118302 0.68 0.693766
Target:  5'- uGGCccAGCUGACgGacgugcCCAGCUCGguGa -3'
miRNA:   3'- cCCGcaUCGACUGgC------GGUCGAGCguC- -5'
29143 3' -59.4 NC_006146.1 + 4149 0.68 0.693766
Target:  5'- uGGGCGUgaAGCUGACguaCGGCUCGg-- -3'
miRNA:   3'- -CCCGCA--UCGACUGgcgGUCGAGCguc -5'
29143 3' -59.4 NC_006146.1 + 123783 0.68 0.693766
Target:  5'- -uGCGUAGCUGGCUGCCgucauggugacGGCUCu--- -3'
miRNA:   3'- ccCGCAUCGACUGGCGG-----------UCGAGcguc -5'
29143 3' -59.4 NC_006146.1 + 56591 0.68 0.693766
Target:  5'- cGGGCGccgAGCccGCCGCCGGUcuccUCGCc- -3'
miRNA:   3'- -CCCGCa--UCGacUGGCGGUCG----AGCGuc -5'
29143 3' -59.4 NC_006146.1 + 55266 0.68 0.683938
Target:  5'- cGGGCGaAGC-GGCuCGUgGgGCUCGCGGu -3'
miRNA:   3'- -CCCGCaUCGaCUG-GCGgU-CGAGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 154649 0.68 0.674069
Target:  5'- uGGCGc-GCUG-CCGCCGGCU-GCAc -3'
miRNA:   3'- cCCGCauCGACuGGCGGUCGAgCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.