miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29143 3' -59.4 NC_006146.1 + 170598 0.66 0.787985
Target:  5'- uGGGCGUGGCgaGCgCGCCgGGCcCGCc- -3'
miRNA:   3'- -CCCGCAUCGacUG-GCGG-UCGaGCGuc -5'
29143 3' -59.4 NC_006146.1 + 170486 0.68 0.697684
Target:  5'- gGGGCG-AGCggggggcuuccccgGACCcCCAGCgCGCGGc -3'
miRNA:   3'- -CCCGCaUCGa-------------CUGGcGGUCGaGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 169666 0.67 0.722926
Target:  5'- uGGGCGUGGCgGGCgCGCgUGGCcCGCc- -3'
miRNA:   3'- -CCCGCAUCGaCUG-GCG-GUCGaGCGuc -5'
29143 3' -59.4 NC_006146.1 + 168734 0.67 0.722926
Target:  5'- uGGGCGUGGCgGGCgCGCgUGGCcCGCc- -3'
miRNA:   3'- -CCCGCAUCGaCUG-GCG-GUCGaGCGuc -5'
29143 3' -59.4 NC_006146.1 + 167802 0.67 0.722926
Target:  5'- uGGGCGUGGCgGGCgCGCgUGGCcCGCc- -3'
miRNA:   3'- -CCCGCAUCGaCUG-GCG-GUCGaGCGuc -5'
29143 3' -59.4 NC_006146.1 + 165818 0.68 0.693766
Target:  5'- gGGGCGUccCUGGCCGCguGgaCGCc- -3'
miRNA:   3'- -CCCGCAucGACUGGCGguCgaGCGuc -5'
29143 3' -59.4 NC_006146.1 + 160367 0.7 0.565033
Target:  5'- uGGCGUcucagcgcccuuGGCaGGCCGcCCAGuCUCGCAa -3'
miRNA:   3'- cCCGCA------------UCGaCUGGC-GGUC-GAGCGUc -5'
29143 3' -59.4 NC_006146.1 + 160133 0.71 0.503475
Target:  5'- uGGGCGgcggacuuuggcaGGCUGGCCuuuaagGCCAGCUgGCGu -3'
miRNA:   3'- -CCCGCa------------UCGACUGG------CGGUCGAgCGUc -5'
29143 3' -59.4 NC_006146.1 + 159370 1.11 0.001193
Target:  5'- gGGGCGUAGCUGACCGCCAGCUCGCAGg -3'
miRNA:   3'- -CCCGCAUCGACUGGCGGUCGAGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 156584 0.66 0.805505
Target:  5'- -uGCGUgaguucuccAGCagGugCGCCAGCUC-CAGg -3'
miRNA:   3'- ccCGCA---------UCGa-CugGCGGUCGAGcGUC- -5'
29143 3' -59.4 NC_006146.1 + 154898 0.69 0.6443
Target:  5'- aGGGCcucgcccgGGCUGACCGCguccGCccuUCGCAGg -3'
miRNA:   3'- -CCCGca------UCGACUGGCGgu--CG---AGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 154649 0.68 0.674069
Target:  5'- uGGCGc-GCUG-CCGCCGGCU-GCAc -3'
miRNA:   3'- cCCGCauCGACuGGCGGUCGAgCGUc -5'
29143 3' -59.4 NC_006146.1 + 153427 0.68 0.674069
Target:  5'- cGGGUGUGGCUGGCUuuggagggGCCGGUgUUGUg- -3'
miRNA:   3'- -CCCGCAUCGACUGG--------CGGUCG-AGCGuc -5'
29143 3' -59.4 NC_006146.1 + 147173 0.66 0.805505
Target:  5'- cGGCGgcGCaGACCGgcgccccuucgcCCGGUgCGCAGa -3'
miRNA:   3'- cCCGCauCGaCUGGC------------GGUCGaGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 147104 0.67 0.751421
Target:  5'- uGGGCG-AGCUGgggcucagcggGCC-CCAGacgCGCAGg -3'
miRNA:   3'- -CCCGCaUCGAC-----------UGGcGGUCga-GCGUC- -5'
29143 3' -59.4 NC_006146.1 + 146678 0.7 0.574852
Target:  5'- cGGGCGgugGGC-GGCC-CCGGCcccaacagaccUCGCAGg -3'
miRNA:   3'- -CCCGCa--UCGaCUGGcGGUCG-----------AGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 126720 0.69 0.6443
Target:  5'- aGGGCGcagaGGCUGgagggcACCGCCAGUUgUGCGa -3'
miRNA:   3'- -CCCGCa---UCGAC------UGGCGGUCGA-GCGUc -5'
29143 3' -59.4 NC_006146.1 + 123923 0.66 0.787095
Target:  5'- cGGGCGcaauuccUGGCggcGGCCggGCCGGCgaaauaCGCGGg -3'
miRNA:   3'- -CCCGC-------AUCGa--CUGG--CGGUCGa-----GCGUC- -5'
29143 3' -59.4 NC_006146.1 + 123783 0.68 0.693766
Target:  5'- -uGCGUAGCUGGCUGCCgucauggugacGGCUCu--- -3'
miRNA:   3'- ccCGCAUCGACUGGCGG-----------UCGAGcguc -5'
29143 3' -59.4 NC_006146.1 + 121497 0.67 0.722926
Target:  5'- gGGGC--AGCUGACgGUgGGCaugaCGCAGg -3'
miRNA:   3'- -CCCGcaUCGACUGgCGgUCGa---GCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.