miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29143 3' -59.4 NC_006146.1 + 43634 0.78 0.195508
Target:  5'- uGGGCGgcggGGCgUGGCCGCCuggggagaggggcccGGCUCGCAu -3'
miRNA:   3'- -CCCGCa---UCG-ACUGGCGG---------------UCGAGCGUc -5'
29143 3' -59.4 NC_006146.1 + 59311 0.69 0.6443
Target:  5'- cGGUGaccUGGCUGGCCGagaGGCUgGCGGu -3'
miRNA:   3'- cCCGC---AUCGACUGGCgg-UCGAgCGUC- -5'
29143 3' -59.4 NC_006146.1 + 116805 0.69 0.634349
Target:  5'- aGGGCGUGGUggagGGCguccaggacgugUGCCGGgaCGCGGc -3'
miRNA:   3'- -CCCGCAUCGa---CUG------------GCGGUCgaGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 23797 0.69 0.634349
Target:  5'- gGGGCcc-GCUGAgCC-CCAGCUCGCc- -3'
miRNA:   3'- -CCCGcauCGACU-GGcGGUCGAGCGuc -5'
29143 3' -59.4 NC_006146.1 + 112353 0.69 0.624396
Target:  5'- aGGGCuccauGUAggccgccacGCUGACCgGCC-GCUUGCAGa -3'
miRNA:   3'- -CCCG-----CAU---------CGACUGG-CGGuCGAGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 40016 0.69 0.604514
Target:  5'- uGGGCGUAGCagggGGCCuGCUgggGGC-CGUAGc -3'
miRNA:   3'- -CCCGCAUCGa---CUGG-CGG---UCGaGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 42740 0.7 0.574852
Target:  5'- cGGCGUcGCUGcAUCGCCuGCggcaGCAGg -3'
miRNA:   3'- cCCGCAuCGAC-UGGCGGuCGag--CGUC- -5'
29143 3' -59.4 NC_006146.1 + 160133 0.71 0.503475
Target:  5'- uGGGCGgcggacuuuggcaGGCUGGCCuuuaagGCCAGCUgGCGu -3'
miRNA:   3'- -CCCGCa------------UCGACUGG------CGGUCGAgCGUc -5'
29143 3' -59.4 NC_006146.1 + 42782 0.73 0.37364
Target:  5'- aGGCGgcGCgUGGCCGCCucggccagguuggcGGuCUCGCAGa -3'
miRNA:   3'- cCCGCauCG-ACUGGCGG--------------UC-GAGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 118302 0.68 0.693766
Target:  5'- uGGCccAGCUGACgGacgugcCCAGCUCGguGa -3'
miRNA:   3'- cCCGcaUCGACUGgC------GGUCGAGCguC- -5'
29143 3' -59.4 NC_006146.1 + 165818 0.68 0.693766
Target:  5'- gGGGCGUccCUGGCCGCguGgaCGCc- -3'
miRNA:   3'- -CCCGCAucGACUGGCGguCgaGCGuc -5'
29143 3' -59.4 NC_006146.1 + 102915 0.68 0.693766
Target:  5'- uGGCGUGGCUgcgccccaaGAUCGUgGGCUgccugCGCAGc -3'
miRNA:   3'- cCCGCAUCGA---------CUGGCGgUCGA-----GCGUC- -5'
29143 3' -59.4 NC_006146.1 + 19141 0.66 0.787985
Target:  5'- aGGCGcaaGGCUGACgggGCCAGCgugUGCGu -3'
miRNA:   3'- cCCGCa--UCGACUGg--CGGUCGa--GCGUc -5'
29143 3' -59.4 NC_006146.1 + 11532 0.66 0.787985
Target:  5'- -uGCG-AGCUGGCgGUCAGCUaCGCc- -3'
miRNA:   3'- ccCGCaUCGACUGgCGGUCGA-GCGuc -5'
29143 3' -59.4 NC_006146.1 + 123923 0.66 0.787095
Target:  5'- cGGGCGcaauuccUGGCggcGGCCggGCCGGCgaaauaCGCGGg -3'
miRNA:   3'- -CCCGC-------AUCGa--CUGG--CGGUCGa-----GCGUC- -5'
29143 3' -59.4 NC_006146.1 + 41144 0.66 0.769935
Target:  5'- gGGGCGUGcGCUGACUcUguGCaauaUCGCAa -3'
miRNA:   3'- -CCCGCAU-CGACUGGcGguCG----AGCGUc -5'
29143 3' -59.4 NC_006146.1 + 42426 0.67 0.750484
Target:  5'- aGGCGagacgcAGCUGggugcgcGCCGCCAGCaUgGCGGc -3'
miRNA:   3'- cCCGCa-----UCGAC-------UGGCGGUCG-AgCGUC- -5'
29143 3' -59.4 NC_006146.1 + 102037 0.67 0.742011
Target:  5'- aGGGCcaGGCUG-UCGCCAGCcUGCu- -3'
miRNA:   3'- -CCCGcaUCGACuGGCGGUCGaGCGuc -5'
29143 3' -59.4 NC_006146.1 + 92342 0.67 0.732509
Target:  5'- gGGGC--AGCUGAUauggGgCGGCUCGCAu -3'
miRNA:   3'- -CCCGcaUCGACUGg---CgGUCGAGCGUc -5'
29143 3' -59.4 NC_006146.1 + 108728 0.68 0.703546
Target:  5'- uGGGCGU-GCUGGuguCCGCCucCUCGgAGu -3'
miRNA:   3'- -CCCGCAuCGACU---GGCGGucGAGCgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.