miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29143 5' -58.1 NC_006146.1 + 38151 0.66 0.868869
Target:  5'- -aCCGCGG-CAUc-CGGCCCCgGAGa -3'
miRNA:   3'- caGGUGCUaGUAcuGCCGGGGgCUCa -5'
29143 5' -58.1 NC_006146.1 + 56113 0.66 0.861531
Target:  5'- cUCCACGAaggCgaagGUGgccGCGGgCCCCGAGa -3'
miRNA:   3'- cAGGUGCUa--G----UAC---UGCCgGGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 66648 0.66 0.861531
Target:  5'- -cCCACGAUagc-AUGGCCUCUGGGUa -3'
miRNA:   3'- caGGUGCUAguacUGCCGGGGGCUCA- -5'
29143 5' -58.1 NC_006146.1 + 73042 0.66 0.861531
Target:  5'- uUCCACGGccCGgggucGGCGGCCCCCu--- -3'
miRNA:   3'- cAGGUGCUa-GUa----CUGCCGGGGGcuca -5'
29143 5' -58.1 NC_006146.1 + 143301 0.66 0.861531
Target:  5'- -cCCAUGA---UGugGGCCCUgGAGg -3'
miRNA:   3'- caGGUGCUaguACugCCGGGGgCUCa -5'
29143 5' -58.1 NC_006146.1 + 146379 0.66 0.861531
Target:  5'- -cCCAUGA---UGugGGCCCUgGAGg -3'
miRNA:   3'- caGGUGCUaguACugCCGGGGgCUCa -5'
29143 5' -58.1 NC_006146.1 + 149457 0.66 0.861531
Target:  5'- -cCCAUGA---UGugGGCCCUgGAGg -3'
miRNA:   3'- caGGUGCUaguACugCCGGGGgCUCa -5'
29143 5' -58.1 NC_006146.1 + 152535 0.66 0.861531
Target:  5'- -cCCAUGA---UGugGGCCCUgGAGg -3'
miRNA:   3'- caGGUGCUaguACugCCGGGGgCUCa -5'
29143 5' -58.1 NC_006146.1 + 155613 0.66 0.861531
Target:  5'- -cCCAUGA---UGugGGCCCUgGAGg -3'
miRNA:   3'- caGGUGCUaguACugCCGGGGgCUCa -5'
29143 5' -58.1 NC_006146.1 + 20694 0.66 0.853995
Target:  5'- cUCCGCGugcgCAuaaUGGCGGCCCUgGAc- -3'
miRNA:   3'- cAGGUGCua--GU---ACUGCCGGGGgCUca -5'
29143 5' -58.1 NC_006146.1 + 14538 0.66 0.853995
Target:  5'- cUCCGCGugcgCAuaaUGGCGGCCCUgGAc- -3'
miRNA:   3'- cAGGUGCua--GU---ACUGCCGGGGgCUca -5'
29143 5' -58.1 NC_006146.1 + 26850 0.66 0.853995
Target:  5'- cUCCGCGugcgCAuaaUGGCGGCCCUgGAc- -3'
miRNA:   3'- cAGGUGCua--GU---ACUGCCGGGGgCUca -5'
29143 5' -58.1 NC_006146.1 + 17616 0.66 0.853995
Target:  5'- cUCCGCGugcgCAuaaUGGCGGCCCUgGAc- -3'
miRNA:   3'- cAGGUGCua--GU---ACUGCCGGGGgCUca -5'
29143 5' -58.1 NC_006146.1 + 23772 0.66 0.853995
Target:  5'- cUCCGCGugcgCAuaaUGGCGGCCCUgGAc- -3'
miRNA:   3'- cAGGUGCua--GU---ACUGCCGGGGgCUca -5'
29143 5' -58.1 NC_006146.1 + 17692 0.66 0.853995
Target:  5'- aUCUACGGgcggccCGUGGCGGCCaagcgCCUGGGg -3'
miRNA:   3'- cAGGUGCUa-----GUACUGCCGG-----GGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 8779 0.66 0.838354
Target:  5'- -cCCACcGUgG-GACGGCCCCCcAGUg -3'
miRNA:   3'- caGGUGcUAgUaCUGCCGGGGGcUCA- -5'
29143 5' -58.1 NC_006146.1 + 165941 0.66 0.838354
Target:  5'- -gCCAgGAggcucUCGUGGCcccuGGUCCCCGGGg -3'
miRNA:   3'- caGGUgCU-----AGUACUG----CCGGGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 169677 0.66 0.830262
Target:  5'- ---gGCGcgCGUGGCccGCCCCCGGGUc -3'
miRNA:   3'- caggUGCuaGUACUGc-CGGGGGCUCA- -5'
29143 5' -58.1 NC_006146.1 + 200 0.66 0.830262
Target:  5'- cUCUACGcgCcgGugcccccgcgACGGUCCCCGGGg -3'
miRNA:   3'- cAGGUGCuaGuaC----------UGCCGGGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 41048 0.66 0.830262
Target:  5'- cGUCCGCGG-CGgcccUGGgGGCCUCgGGGUg -3'
miRNA:   3'- -CAGGUGCUaGU----ACUgCCGGGGgCUCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.