miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29143 5' -58.1 NC_006146.1 + 114151 0.72 0.528365
Target:  5'- cUCCGCGAUCAggccccgGAcgucccgcgcgaauuCGGCCCCCuGAGa -3'
miRNA:   3'- cAGGUGCUAGUa------CU---------------GCCGGGGG-CUCa -5'
29143 5' -58.1 NC_006146.1 + 110837 0.67 0.821998
Target:  5'- cUCCACGGgaCGaGGCGGCgCCCGAu- -3'
miRNA:   3'- cAGGUGCUa-GUaCUGCCGgGGGCUca -5'
29143 5' -58.1 NC_006146.1 + 11508 0.68 0.76923
Target:  5'- -gUCAUGAUCGUGgacagcGCGGCCUgCGAGc -3'
miRNA:   3'- caGGUGCUAGUAC------UGCCGGGgGCUCa -5'
29143 5' -58.1 NC_006146.1 + 130385 0.69 0.721982
Target:  5'- -cCCGgGAaaaCAcGugGGCCCCCGAGc -3'
miRNA:   3'- caGGUgCUa--GUaCugCCGGGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 51797 0.69 0.702508
Target:  5'- aGUCCAgccacuUGAUCAggagGGCGGCCuCCuCGGGa -3'
miRNA:   3'- -CAGGU------GCUAGUa---CUGCCGG-GG-GCUCa -5'
29143 5' -58.1 NC_006146.1 + 6428 0.7 0.662946
Target:  5'- -cCCAgGGcCAUGugGGCCCUgGGGUc -3'
miRNA:   3'- caGGUgCUaGUACugCCGGGGgCUCA- -5'
29143 5' -58.1 NC_006146.1 + 61198 0.7 0.613015
Target:  5'- --aCACGGUCAUGGCGGagcucugCCCCGAu- -3'
miRNA:   3'- cagGUGCUAGUACUGCCg------GGGGCUca -5'
29143 5' -58.1 NC_006146.1 + 72433 0.71 0.573269
Target:  5'- gGUCCGCGGaC-UGACccagagacuGGCCCCCGGGc -3'
miRNA:   3'- -CAGGUGCUaGuACUG---------CCGGGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 61876 0.71 0.553609
Target:  5'- uUCCACGGg---GGCGcGCCCUCGGGUa -3'
miRNA:   3'- cAGGUGCUaguaCUGC-CGGGGGCUCA- -5'
29143 5' -58.1 NC_006146.1 + 200 0.66 0.830262
Target:  5'- cUCUACGcgCcgGugcccccgcgACGGUCCCCGGGg -3'
miRNA:   3'- cAGGUGCuaGuaC----------UGCCGGGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 41048 0.66 0.830262
Target:  5'- cGUCCGCGG-CGgcccUGGgGGCCUCgGGGUg -3'
miRNA:   3'- -CAGGUGCUaGU----ACUgCCGGGGgCUCA- -5'
29143 5' -58.1 NC_006146.1 + 165941 0.66 0.838354
Target:  5'- -gCCAgGAggcucUCGUGGCcccuGGUCCCCGGGg -3'
miRNA:   3'- caGGUgCU-----AGUACUG----CCGGGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 155613 0.66 0.861531
Target:  5'- -cCCAUGA---UGugGGCCCUgGAGg -3'
miRNA:   3'- caGGUGCUaguACugCCGGGGgCUCa -5'
29143 5' -58.1 NC_006146.1 + 152535 0.66 0.861531
Target:  5'- -cCCAUGA---UGugGGCCCUgGAGg -3'
miRNA:   3'- caGGUGCUaguACugCCGGGGgCUCa -5'
29143 5' -58.1 NC_006146.1 + 149457 0.66 0.861531
Target:  5'- -cCCAUGA---UGugGGCCCUgGAGg -3'
miRNA:   3'- caGGUGCUaguACugCCGGGGgCUCa -5'
29143 5' -58.1 NC_006146.1 + 146379 0.66 0.861531
Target:  5'- -cCCAUGA---UGugGGCCCUgGAGg -3'
miRNA:   3'- caGGUGCUaguACugCCGGGGgCUCa -5'
29143 5' -58.1 NC_006146.1 + 143301 0.66 0.861531
Target:  5'- -cCCAUGA---UGugGGCCCUgGAGg -3'
miRNA:   3'- caGGUGCUaguACugCCGGGGgCUCa -5'
29143 5' -58.1 NC_006146.1 + 73042 0.66 0.861531
Target:  5'- uUCCACGGccCGgggucGGCGGCCCCCu--- -3'
miRNA:   3'- cAGGUGCUa-GUa----CUGCCGGGGGcuca -5'
29143 5' -58.1 NC_006146.1 + 17692 0.66 0.853995
Target:  5'- aUCUACGGgcggccCGUGGCGGCCaagcgCCUGGGg -3'
miRNA:   3'- cAGGUGCUa-----GUACUGCCGG-----GGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 8779 0.66 0.838354
Target:  5'- -cCCACcGUgG-GACGGCCCCCcAGUg -3'
miRNA:   3'- caGGUGcUAgUaCUGCCGGGGGcUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.