miRNA display CGI


Results 41 - 60 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 153885 0.72 0.789262
Target:  5'- -gGAGCCGGGGCCU-CGG-GGAGGGa -3'
miRNA:   3'- cgUUUGGUCUCGGAcGCUaUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 147729 0.72 0.789262
Target:  5'- -gGAGCCGGGGCCU-CGG-GGAGGGa -3'
miRNA:   3'- cgUUUGGUCUCGGAcGCUaUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 156963 0.72 0.789262
Target:  5'- -gGAGCCGGGGCCU-CGG-GGAGGGa -3'
miRNA:   3'- cgUUUGGUCUCGGAcGCUaUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 144652 0.72 0.789262
Target:  5'- -gGAGCCGGGGCCU-CGG-GGAGGGa -3'
miRNA:   3'- cgUUUGGUCUCGGAcGCUaUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 56219 0.71 0.798459
Target:  5'- aCGAGCCGcGAGCCguccaGCGGguccgcGGGGGCg -3'
miRNA:   3'- cGUUUGGU-CUCGGa----CGCUau----CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 54997 0.71 0.798459
Target:  5'- gGguGGCCGGaAGCCccccggGCGGgauGGGGGCg -3'
miRNA:   3'- -CguUUGGUC-UCGGa-----CGCUau-CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 112509 0.71 0.816379
Target:  5'- aGCGGuCCAGGGgC--CGGUGGAGGGCc -3'
miRNA:   3'- -CGUUuGGUCUCgGacGCUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 154665 0.71 0.816379
Target:  5'- gGCAGGCCGGgucuugGGCCUGgGAguccGGGGUg -3'
miRNA:   3'- -CGUUUGGUC------UCGGACgCUauc-UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 41012 0.71 0.816379
Target:  5'- gGCGAAgagccgggcgUCAGAGCCgUGgGA-GGAGGGCc -3'
miRNA:   3'- -CGUUU----------GGUCUCGG-ACgCUaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 41486 0.71 0.825085
Target:  5'- uGCAGauGCgGGAGUUUGUGGUcuGGGGCa -3'
miRNA:   3'- -CGUU--UGgUCUCGGACGCUAucUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 105179 0.71 0.833609
Target:  5'- cGCAccguccaguGACCGGGGCCgGgGAgccGGGGGUg -3'
miRNA:   3'- -CGU---------UUGGUCUCGGaCgCUau-CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 68968 0.71 0.833609
Target:  5'- gGCAGGgCAGAGCC-GCuGAUAGGGaGCc -3'
miRNA:   3'- -CGUUUgGUCUCGGaCG-CUAUCUCcCG- -5'
29145 3' -53.2 NC_006146.1 + 65551 0.7 0.849279
Target:  5'- aGCAAcUCAGAGCCU-CGGUagaaaagAGAGcGGCg -3'
miRNA:   3'- -CGUUuGGUCUCGGAcGCUA-------UCUC-CCG- -5'
29145 3' -53.2 NC_006146.1 + 52073 0.7 0.850084
Target:  5'- aGCAuGACgGGAgGgCUGCGGUcGGGGGCc -3'
miRNA:   3'- -CGU-UUGgUCU-CgGACGCUAuCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 157742 0.7 0.850084
Target:  5'- gGCAGGCCGGgucuugGGCCUGgGAgguccGGGGUg -3'
miRNA:   3'- -CGUUUGGUC------UCGGACgCUauc--UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 151587 0.7 0.850084
Target:  5'- gGCAGGCCGGgucuugGGCCUGgGAgguccGGGGUg -3'
miRNA:   3'- -CGUUUGGUC------UCGGACgCUauc--UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 148509 0.7 0.850084
Target:  5'- gGCAGGCCGGgucuugGGCCUGgGAgguccGGGGUg -3'
miRNA:   3'- -CGUUUGGUC------UCGGACgCUauc--UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 142353 0.7 0.850084
Target:  5'- gGCAGGCCGGgucuugGGCCUGgGAgguccGGGGUg -3'
miRNA:   3'- -CGUUUGGUC------UCGGACgCUauc--UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 145431 0.7 0.850084
Target:  5'- gGCAGGCCGGgucuugGGCCUGgGAgguccGGGGUg -3'
miRNA:   3'- -CGUUUGGUC------UCGGACgCUauc--UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 45026 0.7 0.850084
Target:  5'- uGUuuACCAGAagGCCUuCGA-GGAGGGCc -3'
miRNA:   3'- -CGuuUGGUCU--CGGAcGCUaUCUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.