miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 5' -61.7 NC_006146.1 + 167843 0.69 0.48664
Target:  5'- -gGGCuCCCCcUCACGGguGGGCgcucagaucGGCGCg -3'
miRNA:   3'- caCCG-GGGGuAGUGCU--UCCG---------CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 128528 0.69 0.48664
Target:  5'- -gGGCgCCCC-UCGCccacccuGGCGGCGCg -3'
miRNA:   3'- caCCG-GGGGuAGUGcuu----CCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 72455 0.69 0.504211
Target:  5'- cUGGCCCCC-------GGGCGGCGCc -3'
miRNA:   3'- cACCGGGGGuagugcuUCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 30130 0.69 0.505143
Target:  5'- -aGcGCCCCCAUgCAgGggGGUGG-GCa -3'
miRNA:   3'- caC-CGGGGGUA-GUgCuuCCGCCgCGa -5'
29145 5' -61.7 NC_006146.1 + 48835 0.69 0.514508
Target:  5'- -aGGCCUUCAgcugCuccuCGGAGGCGGgCGCg -3'
miRNA:   3'- caCCGGGGGUa---Gu---GCUUCCGCC-GCGa -5'
29145 5' -61.7 NC_006146.1 + 38975 0.68 0.533443
Target:  5'- -gGGCCCCCAgacucUCGCaGAGGgGGCa-- -3'
miRNA:   3'- caCCGGGGGU-----AGUGcUUCCgCCGcga -5'
29145 5' -61.7 NC_006146.1 + 51251 0.68 0.533443
Target:  5'- aUGGCCCUUGUCcUGAucucccggaGGGUGGCGUUg -3'
miRNA:   3'- cACCGGGGGUAGuGCU---------UCCGCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 114576 0.68 0.539172
Target:  5'- -cGGCCUCCuUCucgcggcgcagcuACGGccugggccaccucgAGGCGGCGCUg -3'
miRNA:   3'- caCCGGGGGuAG-------------UGCU--------------UCCGCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 166795 0.68 0.543003
Target:  5'- cUGGCCgCCGUCAucaaguccaUGAccGCGGUGCUg -3'
miRNA:   3'- cACCGGgGGUAGU---------GCUucCGCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 53847 0.68 0.543003
Target:  5'- uGUGGUCCCgGagGCGGuAGGCGaCGCUg -3'
miRNA:   3'- -CACCGGGGgUagUGCU-UCCGCcGCGA- -5'
29145 5' -61.7 NC_006146.1 + 95077 0.68 0.546843
Target:  5'- --uGCCCCUGgugCAugucccgcagggccuCGAAGGCGGCGCc -3'
miRNA:   3'- cacCGGGGGUa--GU---------------GCUUCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 45169 0.68 0.55262
Target:  5'- -aGGCCUCgGaauCGgcGGCGGCGCUc -3'
miRNA:   3'- caCCGGGGgUaguGCuuCCGCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 15109 0.68 0.55262
Target:  5'- gGUGGCCCCCAgggcCAcCGAGcggcucuucugcGGCGGgGUc -3'
miRNA:   3'- -CACCGGGGGUa---GU-GCUU------------CCGCCgCGa -5'
29145 5' -61.7 NC_006146.1 + 55642 0.68 0.562286
Target:  5'- -gGGCCCCCGagGggugcagcagcCGGagccAGGCGGCGUUg -3'
miRNA:   3'- caCCGGGGGUagU-----------GCU----UCCGCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 111934 0.68 0.562286
Target:  5'- gGUGGCCaCCGUCucccuCGAGGGCuGCaGCa -3'
miRNA:   3'- -CACCGGgGGUAGu----GCUUCCGcCG-CGa -5'
29145 5' -61.7 NC_006146.1 + 59575 0.68 0.568109
Target:  5'- -gGGCCacggcgcagguggCgAUCugGAGGGCGGCGUc -3'
miRNA:   3'- caCCGGg------------GgUAGugCUUCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 139444 0.68 0.571998
Target:  5'- -aGGCCCCCAcggugCcCGggGG-GGUGCc -3'
miRNA:   3'- caCCGGGGGUa----GuGCuuCCgCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 127844 0.68 0.571998
Target:  5'- cUGGCaCCCC-UCAacCGccAGGCGGCGUa -3'
miRNA:   3'- cACCG-GGGGuAGU--GCu-UCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 27331 0.67 0.58175
Target:  5'- cUGGCCCuCCAaaaACaGcGGGUGGCGCg -3'
miRNA:   3'- cACCGGG-GGUag-UG-CuUCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 123286 0.67 0.58175
Target:  5'- cGUGG-CCCUAUCgGCGAucccuGGCGGcCGCc -3'
miRNA:   3'- -CACCgGGGGUAG-UGCUu----CCGCC-GCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.