miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 3' -53.6 NC_006146.1 + 71539 0.66 0.976485
Target:  5'- cUCAACGCGcgGCCCGgGcGCCGa----- -3'
miRNA:   3'- -AGUUGCGCa-UGGGCgC-UGGCauacag -5'
29147 3' -53.6 NC_006146.1 + 114143 0.66 0.973668
Target:  5'- --uGCGCGUGCuCCGCGAucaggccCCGgacGUCc -3'
miRNA:   3'- aguUGCGCAUG-GGCGCU-------GGCauaCAG- -5'
29147 3' -53.6 NC_006146.1 + 49942 0.66 0.971188
Target:  5'- gCAGCGCGcACUCGUGACgGUucuUGg- -3'
miRNA:   3'- aGUUGCGCaUGGGCGCUGgCAu--ACag -5'
29147 3' -53.6 NC_006146.1 + 166779 0.66 0.968239
Target:  5'- gUCAcGCGCGUAgUCGCuGGCCGcc-GUCa -3'
miRNA:   3'- -AGU-UGCGCAUgGGCG-CUGGCauaCAG- -5'
29147 3' -53.6 NC_006146.1 + 106639 0.66 0.968239
Target:  5'- gCAGCGCcUG-CUGCGGCCGgcugGUCa -3'
miRNA:   3'- aGUUGCGcAUgGGCGCUGGCaua-CAG- -5'
29147 3' -53.6 NC_006146.1 + 85348 0.67 0.958124
Target:  5'- -----aCGUGCCCcCGACCGUGUGa- -3'
miRNA:   3'- aguugcGCAUGGGcGCUGGCAUACag -5'
29147 3' -53.6 NC_006146.1 + 102776 0.67 0.95431
Target:  5'- gCGugGCGUGgcgccgcuCCCGCGgACCGgcUGg- -3'
miRNA:   3'- aGUugCGCAU--------GGGCGC-UGGCauACag -5'
29147 3' -53.6 NC_006146.1 + 113453 0.68 0.926539
Target:  5'- -aAACGUG-AgCCGCGGCCcggcuuccucGUAUGUCa -3'
miRNA:   3'- agUUGCGCaUgGGCGCUGG----------CAUACAG- -5'
29147 3' -53.6 NC_006146.1 + 111740 0.69 0.921078
Target:  5'- cCGACGaCGUGCUgGUGGCCcu-UGUCa -3'
miRNA:   3'- aGUUGC-GCAUGGgCGCUGGcauACAG- -5'
29147 3' -53.6 NC_006146.1 + 49038 0.69 0.915377
Target:  5'- -gGGCGCG-GCCCGaGACCGUcgcGUCg -3'
miRNA:   3'- agUUGCGCaUGGGCgCUGGCAua-CAG- -5'
29147 3' -53.6 NC_006146.1 + 166830 0.69 0.909438
Target:  5'- gUCGACGCG-GCCCGgGuCCGcGUGg- -3'
miRNA:   3'- -AGUUGCGCaUGGGCgCuGGCaUACag -5'
29147 3' -53.6 NC_006146.1 + 167425 0.69 0.903262
Target:  5'- cCAGCGCGggguCCCGgGGCgGgggGUCg -3'
miRNA:   3'- aGUUGCGCau--GGGCgCUGgCauaCAG- -5'
29147 3' -53.6 NC_006146.1 + 170220 0.69 0.903262
Target:  5'- cCAGCGCGggguCCCGgGGCgGgggGUCg -3'
miRNA:   3'- aGUUGCGCau--GGGCgCUGgCauaCAG- -5'
29147 3' -53.6 NC_006146.1 + 169512 0.69 0.903262
Target:  5'- cCGGCGCGUGCCgGgGGacCCGggggcGUGUCc -3'
miRNA:   3'- aGUUGCGCAUGGgCgCU--GGCa----UACAG- -5'
29147 3' -53.6 NC_006146.1 + 170443 0.69 0.903262
Target:  5'- cCGGCGCGUGCCgGgGGacCCGggggcGUGUCc -3'
miRNA:   3'- aGUUGCGCAUGGgCgCU--GGCa----UACAG- -5'
29147 3' -53.6 NC_006146.1 + 168580 0.69 0.903262
Target:  5'- cCGGCGCGUGCCgGgGGacCCGggggcGUGUCc -3'
miRNA:   3'- aGUUGCGCAUGGgCgCU--GGCa----UACAG- -5'
29147 3' -53.6 NC_006146.1 + 168357 0.69 0.903262
Target:  5'- cCAGCGCGggguCCCGgGGCgGgggGUCg -3'
miRNA:   3'- aGUUGCGCau--GGGCgCUGgCauaCAG- -5'
29147 3' -53.6 NC_006146.1 + 169289 0.69 0.903262
Target:  5'- cCAGCGCGggguCCCGgGGCgGgggGUCg -3'
miRNA:   3'- aGUUGCGCau--GGGCgCUGgCauaCAG- -5'
29147 3' -53.6 NC_006146.1 + 98308 0.69 0.896853
Target:  5'- -gAGgGCGUGCuCCGUGGCCGUcUGg- -3'
miRNA:   3'- agUUgCGCAUG-GGCGCUGGCAuACag -5'
29147 3' -53.6 NC_006146.1 + 45908 0.7 0.883345
Target:  5'- uUCAGCGCccgGCCgGUGACCGUGccGUa -3'
miRNA:   3'- -AGUUGCGca-UGGgCGCUGGCAUa-CAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.