miRNA display CGI


Results 61 - 80 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 142398 0.71 0.250017
Target:  5'- cUGCCccaGGAGaGGC-CGGACCCCGC-CUg -3'
miRNA:   3'- uACGG---UCUC-CCGcGCCUGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 148554 0.71 0.250017
Target:  5'- cUGCCccaGGAGaGGC-CGGACCCCGC-CUg -3'
miRNA:   3'- uACGG---UCUC-CCGcGCCUGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 122649 0.71 0.250017
Target:  5'- -cGCCAGgacGGcGGCGgGGGCCcuCCGCGCg -3'
miRNA:   3'- uaCGGUC---UC-CCGCgCCUGG--GGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 15312 0.71 0.269772
Target:  5'- -gGCCGGAGGccaGCcccggugugccccugGCGGgcGCCCCGCGCg -3'
miRNA:   3'- uaCGGUCUCC---CG---------------CGCC--UGGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 35605 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 35326 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 34304 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 34397 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 34490 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 34583 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 34676 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 34769 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 34862 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 34954 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 35047 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 35140 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 35233 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 145476 0.71 0.250017
Target:  5'- cUGCCccaGGAGaGGC-CGGACCCCGC-CUg -3'
miRNA:   3'- uACGG---UCUC-CCGcGCCUGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 129628 0.7 0.318436
Target:  5'- -cGCCGGGuccuccgcGGGCGCGuGCUCCGC-CCg -3'
miRNA:   3'- uaCGGUCU--------CCCGCGCcUGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 76375 0.7 0.318436
Target:  5'- -cGCCacgAGAGGGCGCgccgggggagGGACCggggGCGCCg -3'
miRNA:   3'- uaCGG---UCUCCCGCG----------CCUGGgg--CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.