miRNA display CGI


Results 61 - 80 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 77913 0.66 0.475895
Target:  5'- -gGCgCAG-GGGCGgGcGGCCUCGCagguGCCg -3'
miRNA:   3'- uaCG-GUCuCCCGCgC-CUGGGGCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 157837 0.66 0.475895
Target:  5'- -gGCCccGGAGGG-GaCGGGCaCCgaGCGCCg -3'
miRNA:   3'- uaCGG--UCUCCCgC-GCCUG-GGg-CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 156210 0.67 0.467101
Target:  5'- -cGCCAGgugguugcAGGaGaCGCGGGCCCCcucgGCCg -3'
miRNA:   3'- uaCGGUC--------UCC-C-GCGCCUGGGGcg--CGG- -5'
29147 5' -65.4 NC_006146.1 + 167736 0.67 0.467101
Target:  5'- -gGCCugAGGGGGCGCGGcgauuguCgCCGC-CCu -3'
miRNA:   3'- uaCGG--UCUCCCGCGCCu------GgGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 170532 0.67 0.467101
Target:  5'- -gGCCugAGGGGGCGCGGcgauuguCgCCGC-CCu -3'
miRNA:   3'- uaCGG--UCUCCCGCGCCu------GgGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 169601 0.67 0.467101
Target:  5'- -gGCCugAGGGGGCGCGGcgauuguCgCCGC-CCu -3'
miRNA:   3'- uaCGG--UCUCCCGCGCCu------GgGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 139063 0.67 0.467101
Target:  5'- --cCCAGAGGGCGgaagcUGGACUuuG-GCCa -3'
miRNA:   3'- uacGGUCUCCCGC-----GCCUGGggCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 39671 0.67 0.467101
Target:  5'- -gGCCuuGGAGGcG-GCGGGCuCCUGgGCCu -3'
miRNA:   3'- uaCGG--UCUCC-CgCGCCUG-GGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 168668 0.67 0.467101
Target:  5'- -gGCCugAGGGGGCGCGGcgauuguCgCCGC-CCu -3'
miRNA:   3'- uaCGG--UCUCCCGCGCCu------GgGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 139366 0.67 0.461864
Target:  5'- -cGCCGGGGGGgGUgccugcuguuuaguaGGagaagGCCCCcacgGCGCCg -3'
miRNA:   3'- uaCGGUCUCCCgCG---------------CC-----UGGGG----CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 57221 0.67 0.458391
Target:  5'- -gGCCGGAggccGGGCcCGGGCCCga-GCCa -3'
miRNA:   3'- uaCGGUCU----CCCGcGCCUGGGgcgCGG- -5'
29147 5' -65.4 NC_006146.1 + 14559 0.67 0.458391
Target:  5'- cUGCUGGgccgcuuucGGGGCGUgagccccaucccGGA-CCCGCGCCu -3'
miRNA:   3'- uACGGUC---------UCCCGCG------------CCUgGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 170488 0.67 0.449768
Target:  5'- -gGCgagCGGGGGGCuucccCGGACCCCcaGCGCg -3'
miRNA:   3'- uaCG---GUCUCCCGc----GCCUGGGG--CGCGg -5'
29147 5' -65.4 NC_006146.1 + 19513 0.67 0.449768
Target:  5'- aAUGUCAGAGGGgagcCGCccucgGGGCCCaGgGCCc -3'
miRNA:   3'- -UACGGUCUCCC----GCG-----CCUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 16435 0.67 0.449768
Target:  5'- aAUGUCAGAGGGgagcCGCccucgGGGCCCaGgGCCc -3'
miRNA:   3'- -UACGGUCUCCC----GCG-----CCUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 13357 0.67 0.449768
Target:  5'- aAUGUCAGAGGGgagcCGCccucgGGGCCCaGgGCCc -3'
miRNA:   3'- -UACGGUCUCCC----GCG-----CCUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 28747 0.67 0.449768
Target:  5'- aAUGUCAGAGGGgagcCGCccucgGGGCCCaGgGCCc -3'
miRNA:   3'- -UACGGUCUCCC----GCG-----CCUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 114758 0.67 0.449768
Target:  5'- -gGCCgcggGGAGGGCucucggucuCGGGgCCCGCgGCCa -3'
miRNA:   3'- uaCGG----UCUCCCGc--------GCCUgGGGCG-CGG- -5'
29147 5' -65.4 NC_006146.1 + 22591 0.67 0.449768
Target:  5'- aAUGUCAGAGGGgagcCGCccucgGGGCCCaGgGCCc -3'
miRNA:   3'- -UACGGUCUCCC----GCG-----CCUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 25669 0.67 0.449768
Target:  5'- aAUGUCAGAGGGgagcCGCccucgGGGCCCaGgGCCc -3'
miRNA:   3'- -UACGGUCUCCC----GCG-----CCUGGGgCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.