miRNA display CGI


Results 41 - 60 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 24377 0.67 0.42445
Target:  5'- -gGCCAGcuccAGGGCGCGGcGCCuUCGCucuCCg -3'
miRNA:   3'- uaCGGUC----UCCCGCGCC-UGG-GGCGc--GG- -5'
29147 5' -65.4 NC_006146.1 + 25669 0.67 0.449768
Target:  5'- aAUGUCAGAGGGgagcCGCccucgGGGCCCaGgGCCc -3'
miRNA:   3'- -UACGGUCUCCC----GCG-----CCUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 26159 0.71 0.267384
Target:  5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 27364 0.67 0.42445
Target:  5'- -gGCCGGGGGGCGUcuGGACagcagcaaCCGgGgCa -3'
miRNA:   3'- uaCGGUCUCCCGCG--CCUGg-------GGCgCgG- -5'
29147 5' -65.4 NC_006146.1 + 28233 0.67 0.42445
Target:  5'- -aGCCGGAGGGCagGUGG-CUgCGauaGCCg -3'
miRNA:   3'- uaCGGUCUCCCG--CGCCuGGgGCg--CGG- -5'
29147 5' -65.4 NC_006146.1 + 28747 0.67 0.449768
Target:  5'- aAUGUCAGAGGGgagcCGCccucgGGGCCCaGgGCCc -3'
miRNA:   3'- -UACGGUCUCCC----GCG-----CCUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 29237 0.71 0.267384
Target:  5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 30205 0.68 0.399204
Target:  5'- -aGCCAGAGGGC-CGcuGCgCCCGCcgggcugGCCg -3'
miRNA:   3'- uaCGGUCUCCCGcGCc-UG-GGGCG-------CGG- -5'
29147 5' -65.4 NC_006146.1 + 33030 0.69 0.325309
Target:  5'- cUGCCGGcccGGGGCG-GGGCCCgGgacaCGCCc -3'
miRNA:   3'- uACGGUC---UCCCGCgCCUGGGgC----GCGG- -5'
29147 5' -65.4 NC_006146.1 + 33141 0.66 0.484772
Target:  5'- cUGCCccgcuccggguGGGGGGUGgccCGGcugggcACCgCCGCGCCg -3'
miRNA:   3'- uACGG-----------UCUCCCGC---GCC------UGG-GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 33232 0.66 0.502756
Target:  5'- -aGCCGGGuGGCcgccgGCGGGuCCgCCGgGCCg -3'
miRNA:   3'- uaCGGUCUcCCG-----CGCCU-GG-GGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 33332 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 33375 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 33425 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 33468 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 33478 0.68 0.399204
Target:  5'- -gGUCGGgaagggaGGGGCGUGGuCCCCGgGaCCc -3'
miRNA:   3'- uaCGGUC-------UCCCGCGCCuGGGGCgC-GG- -5'
29147 5' -65.4 NC_006146.1 + 33518 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 33561 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 33611 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 33654 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.