miRNA display CGI


Results 61 - 80 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 97850 0.69 0.325309
Target:  5'- cUGgaGGAGGGgGCcgccGACCCCGgGCCg -3'
miRNA:   3'- uACggUCUCCCgCGc---CUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 129398 0.69 0.353897
Target:  5'- -cGUCAGccGGGCGUcGuCCCCGCGCa -3'
miRNA:   3'- uaCGGUCu-CCCGCGcCuGGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 67254 0.73 0.1853
Target:  5'- -gGCUGGGGGGauagGCGGGCCCCuccuccgcGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg---CGCCUGGGG--------CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 97401 0.73 0.203464
Target:  5'- -aGCCu----GCGCGuGACCCCGCGCCu -3'
miRNA:   3'- uaCGGucuccCGCGC-CUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 128194 0.71 0.255701
Target:  5'- -gGCCcaGGGGGGCGcCGcGGCgCCGgGCCa -3'
miRNA:   3'- uaCGG--UCUCCCGC-GC-CUGgGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 20003 0.71 0.267384
Target:  5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 167493 0.71 0.273386
Target:  5'- uGUGCCuggcgggggAGAGGGgGCaGGGCUggcgccgggCCGCGCCc -3'
miRNA:   3'- -UACGG---------UCUCCCgCG-CCUGG---------GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 170288 0.71 0.273386
Target:  5'- uGUGCCuggcgggggAGAGGGgGCaGGGCUggcgccgggCCGCGCCc -3'
miRNA:   3'- -UACGG---------UCUCCCgCG-CCUGG---------GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 45409 0.7 0.298474
Target:  5'- -cGUCGGuGGGCcagcGCGaGGCCCCG-GCCg -3'
miRNA:   3'- uaCGGUCuCCCG----CGC-CUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 53494 0.7 0.307667
Target:  5'- -gGCCGGGGGuGCggucuggcucuggcuGCGGGCCgCGCGUg -3'
miRNA:   3'- uaCGGUCUCC-CG---------------CGCCUGGgGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 170532 0.67 0.467101
Target:  5'- -gGCCugAGGGGGCGCGGcgauuguCgCCGC-CCu -3'
miRNA:   3'- uaCGG--UCUCCCGCGCCu------GgGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 167736 0.67 0.467101
Target:  5'- -gGCCugAGGGGGCGCGGcgauuguCgCCGC-CCu -3'
miRNA:   3'- uaCGG--UCUCCCGCGCCu------GgGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 170449 0.69 0.353897
Target:  5'- cGUGCCGGGGGaccCGgGGGCguguCCCGCGaCCc -3'
miRNA:   3'- -UACGGUCUCCc--GCgCCUG----GGGCGC-GG- -5'
29147 5' -65.4 NC_006146.1 + 44692 0.68 0.368841
Target:  5'- gAUGCCGGuGuGGCgGCGGuggccguggcCCCCGCugGCCg -3'
miRNA:   3'- -UACGGUCuC-CCG-CGCCu---------GGGGCG--CGG- -5'
29147 5' -65.4 NC_006146.1 + 53461 0.68 0.400003
Target:  5'- cUGCCcGGGaGGCGCGGguGCCUCGUcgGUCa -3'
miRNA:   3'- uACGGuCUC-CCGCGCC--UGGGGCG--CGG- -5'
29147 5' -65.4 NC_006146.1 + 168338 0.68 0.408052
Target:  5'- -gGCCGGGGccuGGCGgGGGCCa-GCGCg -3'
miRNA:   3'- uaCGGUCUC---CCGCgCCUGGggCGCGg -5'
29147 5' -65.4 NC_006146.1 + 67672 0.68 0.416202
Target:  5'- -aGCCAcc--GCGCGGAUCUCGCGCg -3'
miRNA:   3'- uaCGGUcuccCGCGCCUGGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 50283 0.67 0.423621
Target:  5'- -gGCCAaGGGGCGCaGGagaucugucaggcGCCgCCGgGCCu -3'
miRNA:   3'- uaCGGUcUCCCGCG-CC-------------UGG-GGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 16435 0.67 0.449768
Target:  5'- aAUGUCAGAGGGgagcCGCccucgGGGCCCaGgGCCc -3'
miRNA:   3'- -UACGGUCUCCC----GCG-----CCUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 25669 0.67 0.449768
Target:  5'- aAUGUCAGAGGGgagcCGCccucgGGGCCCaGgGCCc -3'
miRNA:   3'- -UACGGUCUCCC----GCG-----CCUGGGgCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.