miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29148 5' -59 NC_006146.1 + 141162 0.66 0.832482
Target:  5'- -gCUGCGGUGGuu-GGUUCCCUcuuuauguagacaccGGGGc -3'
miRNA:   3'- gaGGUGCCACCuauCCGAGGGA---------------CCCU- -5'
29148 5' -59 NC_006146.1 + 84693 0.66 0.829227
Target:  5'- aCUCCGauucUGGUGucu-GGCUCCgaGGGAc -3'
miRNA:   3'- -GAGGU----GCCACcuauCCGAGGgaCCCU- -5'
29148 5' -59 NC_006146.1 + 108166 0.66 0.829227
Target:  5'- gUCCGCGG-GGcuccGGCUaUCCUGGGc -3'
miRNA:   3'- gAGGUGCCaCCuau-CCGA-GGGACCCu -5'
29148 5' -59 NC_006146.1 + 33394 0.66 0.829227
Target:  5'- gCUCCG-GGUGGGggguGGCcCgCCUGGGc -3'
miRNA:   3'- -GAGGUgCCACCUau--CCGaG-GGACCCu -5'
29148 5' -59 NC_006146.1 + 137230 0.66 0.820971
Target:  5'- -gCCG-GGUGGGggccUGGGgUCCCgGGGAc -3'
miRNA:   3'- gaGGUgCCACCU----AUCCgAGGGaCCCU- -5'
29148 5' -59 NC_006146.1 + 102387 0.66 0.820971
Target:  5'- gUCCuCGG-GGAgcuGGUgguaucugUCCCUGGGGc -3'
miRNA:   3'- gAGGuGCCaCCUau-CCG--------AGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 126620 0.66 0.820971
Target:  5'- uUUgGCGGUGGucgGUGGGCacaCCCcGGGGc -3'
miRNA:   3'- gAGgUGCCACC---UAUCCGa--GGGaCCCU- -5'
29148 5' -59 NC_006146.1 + 40360 0.66 0.820971
Target:  5'- aUCUGCGGcGGAgaAGGCcCCCUGGu- -3'
miRNA:   3'- gAGGUGCCaCCUa-UCCGaGGGACCcu -5'
29148 5' -59 NC_006146.1 + 104216 0.66 0.820971
Target:  5'- uCUgCACGG-GGAagcUGGGCUUCC-GGGu -3'
miRNA:   3'- -GAgGUGCCaCCU---AUCCGAGGGaCCCu -5'
29148 5' -59 NC_006146.1 + 23489 0.66 0.820971
Target:  5'- --gUACGGgcuGGUGGGCUCgCuCUGGGAg -3'
miRNA:   3'- gagGUGCCac-CUAUCCGAG-G-GACCCU- -5'
29148 5' -59 NC_006146.1 + 114759 0.66 0.820971
Target:  5'- -gCCGCGG-GGA-GGGCUCUCggucucGGGGc -3'
miRNA:   3'- gaGGUGCCaCCUaUCCGAGGGa-----CCCU- -5'
29148 5' -59 NC_006146.1 + 56668 0.66 0.812552
Target:  5'- cCUCCcugaGGUGcc-GGGCcCCCUGGGGc -3'
miRNA:   3'- -GAGGug--CCACcuaUCCGaGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 91755 0.66 0.812552
Target:  5'- uCUCCG-GGUucuuGGGUGGGUg-CCUGGGGu -3'
miRNA:   3'- -GAGGUgCCA----CCUAUCCGagGGACCCU- -5'
29148 5' -59 NC_006146.1 + 90541 0.66 0.812552
Target:  5'- cCUCCcggaGCGGUGGAgcAGGg-CCC-GGGAg -3'
miRNA:   3'- -GAGG----UGCCACCUa-UCCgaGGGaCCCU- -5'
29148 5' -59 NC_006146.1 + 137954 0.66 0.811702
Target:  5'- gUUCACGGgggaGGAUcgcggccGGGcCUCCCgGGGGc -3'
miRNA:   3'- gAGGUGCCa---CCUA-------UCC-GAGGGaCCCU- -5'
29148 5' -59 NC_006146.1 + 56242 0.66 0.803979
Target:  5'- gUCCGCGGgggcGGAggcgGGGCcgUCCUcggcgGGGAg -3'
miRNA:   3'- gAGGUGCCa---CCUa---UCCG--AGGGa----CCCU- -5'
29148 5' -59 NC_006146.1 + 92083 0.66 0.803979
Target:  5'- -aUCACGGcugccUGGAcgcgUGGGcCUCCCaGGGAg -3'
miRNA:   3'- gaGGUGCC-----ACCU----AUCC-GAGGGaCCCU- -5'
29148 5' -59 NC_006146.1 + 8919 0.66 0.795258
Target:  5'- aUCCACcGUGGAgccGGuCUCCCacGGGGc -3'
miRNA:   3'- gAGGUGcCACCUau-CC-GAGGGa-CCCU- -5'
29148 5' -59 NC_006146.1 + 8985 0.66 0.795258
Target:  5'- aUCCACcGUGGAgccGGuCUCCCacGGGGc -3'
miRNA:   3'- gAGGUGcCACCUau-CC-GAGGGa-CCCU- -5'
29148 5' -59 NC_006146.1 + 9052 0.66 0.795258
Target:  5'- aUCCACcGUGGAgccGGuCUCCCacGGGGc -3'
miRNA:   3'- gAGGUGcCACCUau-CC-GAGGGa-CCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.