Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29148 | 5' | -59 | NC_006146.1 | + | 40360 | 0.66 | 0.820971 |
Target: 5'- aUCUGCGGcGGAgaAGGCcCCCUGGu- -3' miRNA: 3'- gAGGUGCCaCCUa-UCCGaGGGACCcu -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 137230 | 0.66 | 0.820971 |
Target: 5'- -gCCG-GGUGGGggccUGGGgUCCCgGGGAc -3' miRNA: 3'- gaGGUgCCACCU----AUCCgAGGGaCCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 114759 | 0.66 | 0.820971 |
Target: 5'- -gCCGCGG-GGA-GGGCUCUCggucucGGGGc -3' miRNA: 3'- gaGGUGCCaCCUaUCCGAGGGa-----CCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 23489 | 0.66 | 0.820971 |
Target: 5'- --gUACGGgcuGGUGGGCUCgCuCUGGGAg -3' miRNA: 3'- gagGUGCCac-CUAUCCGAG-G-GACCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 104216 | 0.66 | 0.820971 |
Target: 5'- uCUgCACGG-GGAagcUGGGCUUCC-GGGu -3' miRNA: 3'- -GAgGUGCCaCCU---AUCCGAGGGaCCCu -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 56668 | 0.66 | 0.812552 |
Target: 5'- cCUCCcugaGGUGcc-GGGCcCCCUGGGGc -3' miRNA: 3'- -GAGGug--CCACcuaUCCGaGGGACCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 123475 | 0.66 | 0.786397 |
Target: 5'- aCUCCAUGGacggcaUGGAggagcugAGGCUggCCCUGGc- -3' miRNA: 3'- -GAGGUGCC------ACCUa------UCCGA--GGGACCcu -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 8919 | 0.66 | 0.795258 |
Target: 5'- aUCCACcGUGGAgccGGuCUCCCacGGGGc -3' miRNA: 3'- gAGGUGcCACCUau-CC-GAGGGa-CCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 8985 | 0.66 | 0.795258 |
Target: 5'- aUCCACcGUGGAgccGGuCUCCCacGGGGc -3' miRNA: 3'- gAGGUGcCACCUau-CC-GAGGGa-CCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 9052 | 0.66 | 0.795258 |
Target: 5'- aUCCACcGUGGAgccGGuCUCCCacGGGGc -3' miRNA: 3'- gAGGUGcCACCUau-CC-GAGGGa-CCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 9119 | 0.66 | 0.795258 |
Target: 5'- aUCCACcGUGGAgccGGuCUCCCacGGGGc -3' miRNA: 3'- gAGGUGcCACCUau-CC-GAGGGa-CCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 91755 | 0.66 | 0.812552 |
Target: 5'- uCUCCG-GGUucuuGGGUGGGUg-CCUGGGGu -3' miRNA: 3'- -GAGGUgCCA----CCUAUCCGagGGACCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 66256 | 0.71 | 0.533975 |
Target: 5'- uCUCCACGGUGGGgggcAGGgUCUCgcGGGu -3' miRNA: 3'- -GAGGUGCCACCUa---UCCgAGGGa-CCCu -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 54422 | 0.72 | 0.46831 |
Target: 5'- cCUCCGCGGUGGAgAGGgUCUC-GGaGAu -3' miRNA: 3'- -GAGGUGCCACCUaUCCgAGGGaCC-CU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 45522 | 0.77 | 0.244502 |
Target: 5'- -gCCACGGUGGGggccUGGGcCUCCUUGGGc -3' miRNA: 3'- gaGGUGCCACCU----AUCC-GAGGGACCCu -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 162027 | 0.77 | 0.233253 |
Target: 5'- gCUCCACGGUGGAguGGCaCUgUGGGAa -3' miRNA: 3'- -GAGGUGCCACCUauCCGaGGgACCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 161995 | 0.99 | 0.008492 |
Target: 5'- gCUCCACGGUGGAUAGGCaCCCUGGGAg -3' miRNA: 3'- -GAGGUGCCACCUAUCCGaGGGACCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 161928 | 0.99 | 0.008492 |
Target: 5'- gCUCCACGGUGGAUAGGCaCCCUGGGAg -3' miRNA: 3'- -GAGGUGCCACCUAUCCGaGGGACCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 161861 | 1.08 | 0.001871 |
Target: 5'- gCUCCACGGUGGAUAGGCUCCCUGGGAg -3' miRNA: 3'- -GAGGUGCCACCUAUCCGAGGGACCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 141162 | 0.66 | 0.832482 |
Target: 5'- -gCUGCGGUGGuu-GGUUCCCUcuuuauguagacaccGGGGc -3' miRNA: 3'- gaGGUGCCACCuauCCGAGGGA---------------CCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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