miRNA display CGI


Results 41 - 60 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29149 3' -62.1 NC_006146.1 + 145187 0.7 0.437184
Target:  5'- cGGUuaGCUUgagGGGcuGGCCCGGCUUCCa -3'
miRNA:   3'- uCCG--UGGGa--CCCu-CUGGGCCGAAGGg -5'
29149 3' -62.1 NC_006146.1 + 168581 0.74 0.274552
Target:  5'- cGGCGCgUgccGGGGGACCCgggGGCgugUCCCg -3'
miRNA:   3'- uCCGUGgGa--CCCUCUGGG---CCGa--AGGG- -5'
29149 3' -62.1 NC_006146.1 + 161807 0.98 0.005865
Target:  5'- uAGGCuCCCUGGGAGACCCGGCUUUCCu -3'
miRNA:   3'- -UCCGuGGGACCCUCUGGGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 129129 0.7 0.428665
Target:  5'- cGGGCGCCC-GGGcgcaGGGCcuCCGGCgggaagCCCa -3'
miRNA:   3'- -UCCGUGGGaCCC----UCUG--GGCCGaa----GGG- -5'
29149 3' -62.1 NC_006146.1 + 161874 1.03 0.002725
Target:  5'- uAGGCuCCCUGGGAGACCCGGCUUCCCu -3'
miRNA:   3'- -UCCGuGGGACCCUCUGGGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 168531 0.68 0.536625
Target:  5'- cGGGCcucCCCUGGG-GGCCUcgggGGCggaggggggggUCCCg -3'
miRNA:   3'- -UCCGu--GGGACCCuCUGGG----CCGa----------AGGG- -5'
29149 3' -62.1 NC_006146.1 + 167309 0.79 0.128484
Target:  5'- cGGCGCCUgcaGGGGGGgCCGGCggggcgUCCCg -3'
miRNA:   3'- uCCGUGGGa--CCCUCUgGGCCGa-----AGGG- -5'
29149 3' -62.1 NC_006146.1 + 153929 0.68 0.527214
Target:  5'- uAGGUACCCUuguccaGGaAGGCCCGccGCUcCCCg -3'
miRNA:   3'- -UCCGUGGGA------CCcUCUGGGC--CGAaGGG- -5'
29149 3' -62.1 NC_006146.1 + 33134 0.69 0.517865
Target:  5'- cGGGCcgcuGCCCcgcuccgggUGGGGGgugGCCCGGCUgggCaCCg -3'
miRNA:   3'- -UCCG----UGGG---------ACCCUC---UGGGCCGAa--G-GG- -5'
29149 3' -62.1 NC_006146.1 + 22158 0.69 0.499372
Target:  5'- uGGUGCCUcuGGAGGCCCuGGCcccgCCCg -3'
miRNA:   3'- uCCGUGGGacCCUCUGGG-CCGaa--GGG- -5'
29149 3' -62.1 NC_006146.1 + 12925 0.69 0.499372
Target:  5'- uGGUGCCUcuGGAGGCCCuGGCcccgCCCg -3'
miRNA:   3'- uCCGUGGGacCCUCUGGG-CCGaa--GGG- -5'
29149 3' -62.1 NC_006146.1 + 169064 0.69 0.472203
Target:  5'- cGGGguCCCgGGGGGcggcGCgCGGCcUUCCCc -3'
miRNA:   3'- -UCCguGGGaCCCUC----UGgGCCG-AAGGG- -5'
29149 3' -62.1 NC_006146.1 + 53315 0.69 0.472203
Target:  5'- uGGCcggaguccgaGCCC-GaGGAGGCCCGGCggCCg -3'
miRNA:   3'- uCCG----------UGGGaC-CCUCUGGGCCGaaGGg -5'
29149 3' -62.1 NC_006146.1 + 41522 0.71 0.411923
Target:  5'- cGGC-CCCaGaGGAGGCCgCcGCUUCCCu -3'
miRNA:   3'- uCCGuGGGaC-CCUCUGG-GcCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 167659 0.71 0.382833
Target:  5'- cGGGgGCCCgGGGGcgugucccgcGACCCgaggggcgagcggggGGCUUCCCc -3'
miRNA:   3'- -UCCgUGGGaCCCU----------CUGGG---------------CCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 3445 0.71 0.367272
Target:  5'- uGGGCuccacgguCCCgcucggGGGGcuaaacuucgucaacGACCUGGCUUCCCc -3'
miRNA:   3'- -UCCGu-------GGGa-----CCCU---------------CUGGGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 170444 0.74 0.274552
Target:  5'- cGGCGCgUgccGGGGGACCCgggGGCgugUCCCg -3'
miRNA:   3'- uCCGUGgGa--CCCUCUGGG---CCGa--AGGG- -5'
29149 3' -62.1 NC_006146.1 + 27852 0.76 0.19313
Target:  5'- gGGGCcuuucagGCCCUcGGGccccucuGGACuCCGGCUUCCCc -3'
miRNA:   3'- -UCCG-------UGGGA-CCC-------UCUG-GGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 18618 0.76 0.19313
Target:  5'- gGGGCcuuucagGCCCUcGGGccccucuGGACuCCGGCUUCCCc -3'
miRNA:   3'- -UCCG-------UGGGA-CCC-------UCUG-GGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 65209 0.78 0.13498
Target:  5'- uGGGgGCCCUGGGAGcCCgGGCgUCCa -3'
miRNA:   3'- -UCCgUGGGACCCUCuGGgCCGaAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.