miRNA display CGI


Results 41 - 60 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29149 3' -62.1 NC_006146.1 + 21420 0.67 0.594124
Target:  5'- aGGGCAgggucCCCaUGGGGGAgCUCuGCUUCuCCa -3'
miRNA:   3'- -UCCGU-----GGG-ACCCUCU-GGGcCGAAG-GG- -5'
29149 3' -62.1 NC_006146.1 + 21696 0.76 0.19313
Target:  5'- gGGGCcuuucagGCCCUcGGGccccucuGGACuCCGGCUUCCCc -3'
miRNA:   3'- -UCCG-------UGGGA-CCC-------UCUG-GGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 22122 0.72 0.341834
Target:  5'- aAGGCACCg-GGGAucgugcuguugcGcCCCGGCUcaUCCCu -3'
miRNA:   3'- -UCCGUGGgaCCCU------------CuGGGCCGA--AGGG- -5'
29149 3' -62.1 NC_006146.1 + 22158 0.69 0.499372
Target:  5'- uGGUGCCUcuGGAGGCCCuGGCcccgCCCg -3'
miRNA:   3'- uCCGUGGGacCCUCUGGG-CCGaa--GGG- -5'
29149 3' -62.1 NC_006146.1 + 22674 0.66 0.681596
Target:  5'- cAGGcCAgCC-GGaGGGAcCCCGGCagCCCg -3'
miRNA:   3'- -UCC-GUgGGaCC-CUCU-GGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 22981 0.66 0.65251
Target:  5'- cGGCAgCCcGGGAGAgCCGcCUuaccucUCCCc -3'
miRNA:   3'- uCCGUgGGaCCCUCUgGGCcGA------AGGG- -5'
29149 3' -62.1 NC_006146.1 + 23075 0.66 0.65251
Target:  5'- cAGGcCGgCC-GGaGGGAcCCCGGCggCCCg -3'
miRNA:   3'- -UCC-GUgGGaCC-CUCU-GGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 23500 0.67 0.622316
Target:  5'- uGGGCucGCUCUGGGAGgugcccgccgugaACUCGGgacUCCCg -3'
miRNA:   3'- -UCCG--UGGGACCCUC-------------UGGGCCga-AGGG- -5'
29149 3' -62.1 NC_006146.1 + 24774 0.76 0.19313
Target:  5'- gGGGCcuuucagGCCCUcGGGccccucuGGACuCCGGCUUCCCc -3'
miRNA:   3'- -UCCG-------UGGGA-CCC-------UCUG-GGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 24945 0.67 0.613553
Target:  5'- cAGGC-CCCUu--AGACCCGGCcaggCCCc -3'
miRNA:   3'- -UCCGuGGGAcccUCUGGGCCGaa--GGG- -5'
29149 3' -62.1 NC_006146.1 + 25236 0.69 0.499372
Target:  5'- uGGUGCCUcuGGAGGCCCuGGCcccgCCCg -3'
miRNA:   3'- uCCGUGGGacCCUCUGGG-CCGaa--GGG- -5'
29149 3' -62.1 NC_006146.1 + 25752 0.66 0.681596
Target:  5'- cAGGcCAgCC-GGaGGGAcCCCGGCagCCCg -3'
miRNA:   3'- -UCC-GUgGGaCC-CUCU-GGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 26059 0.66 0.65251
Target:  5'- cGGCAgCCcGGGAGAgCCGcCUuaccucUCCCc -3'
miRNA:   3'- uCCGUgGGaCCCUCUgGGCcGA------AGGG- -5'
29149 3' -62.1 NC_006146.1 + 26153 0.66 0.65251
Target:  5'- cAGGcCGgCC-GGaGGGAcCCCGGCggCCCg -3'
miRNA:   3'- -UCC-GUgGGaCC-CUCU-GGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 27852 0.76 0.19313
Target:  5'- gGGGCcuuucagGCCCUcGGGccccucuGGACuCCGGCUUCCCc -3'
miRNA:   3'- -UCCG-------UGGGA-CCC-------UCUG-GGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 28314 0.69 0.499372
Target:  5'- uGGUGCCUcuGGAGGCCCuGGCcccgCCCg -3'
miRNA:   3'- uCCGUGGGacCCUCUGGG-CCGaa--GGG- -5'
29149 3' -62.1 NC_006146.1 + 28800 0.67 0.633033
Target:  5'- aGGGCucaCUUGGGGcaGCCCaGCUUUCCg -3'
miRNA:   3'- -UCCGug-GGACCCUc-UGGGcCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 28830 0.66 0.681596
Target:  5'- cAGGcCAgCC-GGaGGGAcCCCGGCagCCCg -3'
miRNA:   3'- -UCC-GUgGGaCC-CUCU-GGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 29137 0.66 0.65251
Target:  5'- cGGCAgCCcGGGAGAgCCGcCUuaccucUCCCc -3'
miRNA:   3'- uCCGUgGGaCCCUCUgGGCcGA------AGGG- -5'
29149 3' -62.1 NC_006146.1 + 29231 0.66 0.65251
Target:  5'- cAGGcCGgCC-GGaGGGAcCCCGGCggCCCg -3'
miRNA:   3'- -UCC-GUgGGaCC-CUCU-GGGCCGaaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.