miRNA display CGI


Results 21 - 40 of 317 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29149 3' -62.1 NC_006146.1 + 12461 0.76 0.19313
Target:  5'- gGGGCcuuucagGCCCUcGGGccccucuGGACuCCGGCUUCCCc -3'
miRNA:   3'- -UCCG-------UGGGA-CCC-------UCUG-GGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 12925 0.69 0.499372
Target:  5'- uGGUGCCUcuGGAGGCCCuGGCcccgCCCg -3'
miRNA:   3'- uCCGUGGGacCCUCUGGG-CCGaa--GGG- -5'
29149 3' -62.1 NC_006146.1 + 13440 0.66 0.681596
Target:  5'- cAGGcCAgCC-GGaGGGAcCCCGGCagCCCg -3'
miRNA:   3'- -UCC-GUgGGaCC-CUCU-GGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 13748 0.66 0.65251
Target:  5'- cGGCAgCCcGGGAGAgCCGcCUuaccucUCCCc -3'
miRNA:   3'- uCCGUgGGaCCCUCUgGGCcGA------AGGG- -5'
29149 3' -62.1 NC_006146.1 + 13842 0.66 0.65251
Target:  5'- cAGGcCGgCC-GGaGGGAcCCCGGCggCCCg -3'
miRNA:   3'- -UCC-GUgGGaCC-CUCU-GGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 14666 0.68 0.555615
Target:  5'- cGGCACCCcGuccacggccgaGGGGGCCCGcGUcUCCUg -3'
miRNA:   3'- uCCGUGGGaC-----------CCUCUGGGC-CGaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 15342 0.71 0.364213
Target:  5'- cGGGCGCCCcGcGcGAG-CCCGGCUccaacgCCCu -3'
miRNA:   3'- -UCCGUGGGaC-C-CUCuGGGCCGAa-----GGG- -5'
29149 3' -62.1 NC_006146.1 + 15413 0.68 0.536625
Target:  5'- cAGGUGgCCUcagaGGGGcuGGCCCGGCUgcagUCCUg -3'
miRNA:   3'- -UCCGUgGGA----CCCU--CUGGGCCGA----AGGG- -5'
29149 3' -62.1 NC_006146.1 + 15540 0.76 0.19313
Target:  5'- gGGGCcuuucagGCCCUcGGGccccucuGGACuCCGGCUUCCCc -3'
miRNA:   3'- -UCCG-------UGGGA-CCC-------UCUG-GGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 16002 0.69 0.499372
Target:  5'- uGGUGCCUcuGGAGGCCCuGGCcccgCCCg -3'
miRNA:   3'- uCCGUGGGacCCUCUGGG-CCGaa--GGG- -5'
29149 3' -62.1 NC_006146.1 + 16007 0.67 0.62329
Target:  5'- cGGUcaGCCCgGGcGAGGCCCuGCccCCCg -3'
miRNA:   3'- uCCG--UGGGaCC-CUCUGGGcCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 16518 0.66 0.681596
Target:  5'- cAGGcCAgCC-GGaGGGAcCCCGGCagCCCg -3'
miRNA:   3'- -UCC-GUgGGaCC-CUCU-GGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 16826 0.66 0.65251
Target:  5'- cGGCAgCCcGGGAGAgCCGcCUuaccucUCCCc -3'
miRNA:   3'- uCCGUgGGaCCCUCUgGGCcGA------AGGG- -5'
29149 3' -62.1 NC_006146.1 + 16920 0.66 0.65251
Target:  5'- cAGGcCGgCC-GGaGGGAcCCCGGCggCCCg -3'
miRNA:   3'- -UCC-GUgGGaCC-CUCU-GGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 18618 0.76 0.19313
Target:  5'- gGGGCcuuucagGCCCUcGGGccccucuGGACuCCGGCUUCCCc -3'
miRNA:   3'- -UCCG-------UGGGA-CCC-------UCUG-GGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 18648 0.67 0.613553
Target:  5'- cAGGCAgCCaGGGAucgcauGCCCGGcCUUCgCa -3'
miRNA:   3'- -UCCGUgGGaCCCUc-----UGGGCC-GAAGgG- -5'
29149 3' -62.1 NC_006146.1 + 19080 0.69 0.499372
Target:  5'- uGGUGCCUcuGGAGGCCCuGGCcccgCCCg -3'
miRNA:   3'- uCCGUGGGacCCUCUGGG-CCGaa--GGG- -5'
29149 3' -62.1 NC_006146.1 + 19596 0.66 0.681596
Target:  5'- cAGGcCAgCC-GGaGGGAcCCCGGCagCCCg -3'
miRNA:   3'- -UCC-GUgGGaCC-CUCU-GGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 19904 0.66 0.65251
Target:  5'- cGGCAgCCcGGGAGAgCCGcCUuaccucUCCCc -3'
miRNA:   3'- uCCGUgGGaCCCUCUgGGCcGA------AGGG- -5'
29149 3' -62.1 NC_006146.1 + 19997 0.66 0.65251
Target:  5'- cAGGcCGgCC-GGaGGGAcCCCGGCggCCCg -3'
miRNA:   3'- -UCC-GUgGGaCC-CUCU-GGGCCGaaGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.