miRNA display CGI


Results 21 - 40 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29149 3' -62.1 NC_006146.1 + 27852 0.76 0.19313
Target:  5'- gGGGCcuuucagGCCCUcGGGccccucuGGACuCCGGCUUCCCc -3'
miRNA:   3'- -UCCG-------UGGGA-CCC-------UCUG-GGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 136763 0.75 0.218297
Target:  5'- cGGgGCUCcGGGAGGCCCGGCcgcgauccUCCCc -3'
miRNA:   3'- uCCgUGGGaCCCUCUGGGCCGa-------AGGG- -5'
29149 3' -62.1 NC_006146.1 + 89125 0.75 0.234058
Target:  5'- uGGCACCCccGGAGACCgGGCggCCa -3'
miRNA:   3'- uCCGUGGGacCCUCUGGgCCGaaGGg -5'
29149 3' -62.1 NC_006146.1 + 47033 0.74 0.262438
Target:  5'- cGGGCGCCCUGGGugcgagaaGGGgCCGGUcgCCg -3'
miRNA:   3'- -UCCGUGGGACCC--------UCUgGGCCGaaGGg -5'
29149 3' -62.1 NC_006146.1 + 139001 0.74 0.26844
Target:  5'- -uGCGCUCUagaGGGAG-CCCGGCUuuuUCCCu -3'
miRNA:   3'- ucCGUGGGA---CCCUCuGGGCCGA---AGGG- -5'
29149 3' -62.1 NC_006146.1 + 170444 0.74 0.274552
Target:  5'- cGGCGCgUgccGGGGGACCCgggGGCgugUCCCg -3'
miRNA:   3'- uCCGUGgGa--CCCUCUGGG---CCGa--AGGG- -5'
29149 3' -62.1 NC_006146.1 + 169513 0.74 0.274552
Target:  5'- cGGCGCgUgccGGGGGACCCgggGGCgugUCCCg -3'
miRNA:   3'- uCCGUGgGa--CCCUCUGGG---CCGa--AGGG- -5'
29149 3' -62.1 NC_006146.1 + 168581 0.74 0.274552
Target:  5'- cGGCGCgUgccGGGGGACCCgggGGCgugUCCCg -3'
miRNA:   3'- uCCGUGgGa--CCCUCUGGG---CCGa--AGGG- -5'
29149 3' -62.1 NC_006146.1 + 141268 0.73 0.294206
Target:  5'- aAGGCGCCugaauuucaguuuagCUGGGAGcauuggcggguucaGCCUGGCUgagCCCc -3'
miRNA:   3'- -UCCGUGG---------------GACCCUC--------------UGGGCCGAa--GGG- -5'
29149 3' -62.1 NC_006146.1 + 151693 0.72 0.341834
Target:  5'- cGGCGCCUUGGG--GCCCGGagUCUCg -3'
miRNA:   3'- uCCGUGGGACCCucUGGGCCgaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 22122 0.72 0.341834
Target:  5'- aAGGCACCg-GGGAucgugcuguugcGcCCCGGCUcaUCCCu -3'
miRNA:   3'- -UCCGUGGgaCCCU------------CuGGGCCGA--AGGG- -5'
29149 3' -62.1 NC_006146.1 + 123963 0.72 0.355891
Target:  5'- cGGGCACCCUGuggcuGGAGAccgagucCCCGuGCgaCCCc -3'
miRNA:   3'- -UCCGUGGGAC-----CCUCU-------GGGC-CGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 15342 0.71 0.364213
Target:  5'- cGGGCGCCCcGcGcGAG-CCCGGCUccaacgCCCu -3'
miRNA:   3'- -UCCGUGGGaC-C-CUCuGGGCCGAa-----GGG- -5'
29149 3' -62.1 NC_006146.1 + 161770 0.71 0.364213
Target:  5'- gAGGCAacgcCCCgUGGGAGACC-GGCU-CCa -3'
miRNA:   3'- -UCCGU----GGG-ACCCUCUGGgCCGAaGGg -5'
29149 3' -62.1 NC_006146.1 + 3445 0.71 0.367272
Target:  5'- uGGGCuccacgguCCCgcucggGGGGcuaaacuucgucaacGACCUGGCUUCCCc -3'
miRNA:   3'- -UCCGu-------GGGa-----CCCU---------------CUGGGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 137209 0.71 0.369579
Target:  5'- cGGGCACaCCccgGGGAGgaagccggguggggGCCUGGggUCCCg -3'
miRNA:   3'- -UCCGUG-GGa--CCCUC--------------UGGGCCgaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 103393 0.71 0.371894
Target:  5'- aGGGCGCCUgccagUGGGGGGCgUCGuGCUcCCCu -3'
miRNA:   3'- -UCCGUGGG-----ACCCUCUG-GGC-CGAaGGG- -5'
29149 3' -62.1 NC_006146.1 + 161971 0.71 0.371894
Target:  5'- cGGGCAacgcCCCgUGGGAGACC-GGCU-CCa -3'
miRNA:   3'- -UCCGU----GGG-ACCCUCUGGgCCGAaGGg -5'
29149 3' -62.1 NC_006146.1 + 48205 0.71 0.371894
Target:  5'- uGGCAUCCgGGGAcuggagGGCCUGGCgcgCCUg -3'
miRNA:   3'- uCCGUGGGaCCCU------CUGGGCCGaa-GGG- -5'
29149 3' -62.1 NC_006146.1 + 7034 0.71 0.379686
Target:  5'- uGGCAUgCUGGaauuGGCCCGGCaaagCCCa -3'
miRNA:   3'- uCCGUGgGACCcu--CUGGGCCGaa--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.