miRNA display CGI


Results 41 - 60 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29149 3' -62.1 NC_006146.1 + 7034 0.71 0.379686
Target:  5'- uGGCAUgCUGGaauuGGCCCGGCaaagCCCa -3'
miRNA:   3'- uCCGUGgGACCcu--CUGGGCCGaa--GGG- -5'
29149 3' -62.1 NC_006146.1 + 167659 0.71 0.382833
Target:  5'- cGGGgGCCCgGGGGcgugucccgcGACCCgaggggcgagcggggGGCUUCCCc -3'
miRNA:   3'- -UCCgUGGGaCCCU----------CUGGG---------------CCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 110401 0.71 0.386791
Target:  5'- gGGaGCACCCUcgccgucGGGGGAgCUGGCccCCCg -3'
miRNA:   3'- -UC-CGUGGGA-------CCCUCUgGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 122038 0.71 0.395593
Target:  5'- uGGCGCCU--GGAGGCCgaCGGCUUCgCg -3'
miRNA:   3'- uCCGUGGGacCCUCUGG--GCCGAAGgG- -5'
29149 3' -62.1 NC_006146.1 + 41500 0.71 0.395593
Target:  5'- gGGGUGCgCgGGGAcgacGCCCGGCUgacgCCCg -3'
miRNA:   3'- -UCCGUGgGaCCCUc---UGGGCCGAa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 140519 0.71 0.398825
Target:  5'- cGGCccuacagcaaaccuaGCCCUGGGAGGgaCGGCacCCCa -3'
miRNA:   3'- uCCG---------------UGGGACCCUCUggGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 161837 0.71 0.403706
Target:  5'- uGGGCcacGCCCcgUGGGAGACC-GGCU-CCa -3'
miRNA:   3'- -UCCG---UGGG--ACCCUCUGGgCCGAaGGg -5'
29149 3' -62.1 NC_006146.1 + 42279 0.71 0.411923
Target:  5'- uGGGCGacaCCgGGGAGGCCaGGUagCCCa -3'
miRNA:   3'- -UCCGUg--GGaCCCUCUGGgCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 41522 0.71 0.411923
Target:  5'- cGGC-CCCaGaGGAGGCCgCcGCUUCCCu -3'
miRNA:   3'- uCCGuGGGaC-CCUCUGG-GcCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 158546 0.7 0.420244
Target:  5'- cGGGguCCCUGGGGcuccuucUCCaGCUUCCCg -3'
miRNA:   3'- -UCCguGGGACCCUcu-----GGGcCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 34499 0.7 0.428665
Target:  5'- gGGGCagcggACCCaGGGGcACCCGGCc-CCCg -3'
miRNA:   3'- -UCCG-----UGGGaCCCUcUGGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 34127 0.7 0.428665
Target:  5'- gGGGCagcggACCCaGGGGcACCCGGCc-CCCg -3'
miRNA:   3'- -UCCG-----UGGGaCCCUcUGGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 34406 0.7 0.428665
Target:  5'- gGGGCagcggACCCaGGGGcACCCGGCc-CCCg -3'
miRNA:   3'- -UCCG-----UGGGaCCCUcUGGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 34313 0.7 0.428665
Target:  5'- gGGGCagcggACCCaGGGGcACCCGGCc-CCCg -3'
miRNA:   3'- -UCCG-----UGGGaCCCUcUGGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 34778 0.7 0.428665
Target:  5'- gGGGCagcggACCCaGGGGcACCCGGCc-CCCg -3'
miRNA:   3'- -UCCG-----UGGGaCCCUcUGGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 33477 0.7 0.428665
Target:  5'- gGGGCagcggACCCaGGGGcACCCGGCc-CCCg -3'
miRNA:   3'- -UCCG-----UGGGaCCCUcUGGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 34034 0.7 0.428665
Target:  5'- gGGGCagcggACCCaGGGGcACCCGGCc-CCCg -3'
miRNA:   3'- -UCCG-----UGGGaCCCUcUGGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 34592 0.7 0.428665
Target:  5'- gGGGCagcggACCCaGGGGcACCCGGCc-CCCg -3'
miRNA:   3'- -UCCG-----UGGGaCCCUcUGGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 33570 0.7 0.428665
Target:  5'- gGGGCagcggACCCaGGGGcACCCGGCc-CCCg -3'
miRNA:   3'- -UCCG-----UGGGaCCCUcUGGGCCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 33384 0.7 0.428665
Target:  5'- gGGGCagcggACCCaGGGGcACCCGGCc-CCCg -3'
miRNA:   3'- -UCCG-----UGGGaCCCUcUGGGCCGaaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.